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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ONIVA01G24470.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | SBP | ||||||||
Protein Properties | Length: 435aa MW: 45602.5 Da PI: 9.1143 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 108.2 | 5.4e-34 | 176 | 265 | 1 | 77 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTS.............SEEETTT--SS--S-STTTT-------S-- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCs.............rfhelsefDeekrsCrrrLakhnerrrkkq 77 +Cq+egC+adls ak+yhrrhkvCe h+ka+vv++sg++qrfCqqCs rfh l+efDe+krsCr+rLa+hn+rrrk++ ONIVA01G24470.1 176 RCQAEGCKADLSGAKHYHRRHKVCEYHAKASVVAASGKQQRFCQQCSrivtlwvyvhvldRFHVLTEFDEAKRSCRKRLAEHNRRRRKPA 265 6*********************************************944444444444445***************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 4.0E-33 | 169 | 251 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 28.53 | 174 | 264 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 2.75E-32 | 175 | 266 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 2.1E-24 | 177 | 263 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 435 aa Download sequence Send to blast |
MMSGRMNAAG DESPFPFGAM QAPGPGAYVG FDHGAAAVAA AQRAGMLQHH HHHMYDGLDF 60 AAAMQFGGGQ DAPPHPQLLA LPPSMAAPPP PPMPMPLQMP MTMPMPGDVY PALGIVKREG 120 GGGGQDAAAG RIGLNLGRRT YFSPGDMLAV DRLLMRSRLG GVFGLGFGGA HHQPPRCQAE 180 GCKADLSGAK HYHRRHKVCE YHAKASVVAA SGKQQRFCQQ CSRIVTLWVY VHVLDRFHVL 240 TEFDEAKRSC RKRLAEHNRR RRKPAAAATT AVAAAKDAAA APVAAGKKPS GGAATSYTGD 300 NKNVVSMSAA KSPISSNTSV ISCLPEQGKH AAAAARPTAL TLGGAPPHES SAPQIGAMLH 360 HHHHHQQDHM QVSSLVHING GGGGGSNNIL SCSSVCSSAL PSTATNGEVS DQNNDNSHNN 420 GGNNNNMHLF EVDFM |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 9e-28 | 177 | 263 | 11 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 246 | 263 | KRSCRKRLAEHNRRRRKP |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}. | |||||
UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP012614 | 0.0 | CP012614.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 6 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015642406.1 | 0.0 | squamosa promoter-binding-like protein 10 | ||||
Swissprot | A2YFT9 | 0.0 | SPL10_ORYSI; Squamosa promoter-binding-like protein 10 | ||||
Swissprot | Q0DAE8 | 0.0 | SPL10_ORYSJ; Squamosa promoter-binding-like protein 10 | ||||
TrEMBL | A0A0E0FP21 | 0.0 | A0A0E0FP21_ORYNI; Uncharacterized protein | ||||
STRING | ONIVA01G24470.1 | 0.0 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2375 | 35 | 93 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G02065.1 | 5e-42 | squamosa promoter binding protein-like 8 |