![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | ONIVA01G22790.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
||||||||
Family | LBD | ||||||||
Protein Properties | Length: 130aa MW: 13899.8 Da PI: 6.9166 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 110.6 | 1.1e-34 | 11 | 113 | 1 | 100 |
DUF260 1 aCaaCkvlrr.kCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeee..redamsslvyeAearardPvyGavgvilklqqqleqlk 91 +CaaC++++r +C+++C+lapyfpa++p++f++++ lFG++ +l+ l+a+ +++ r+++m+s+v+ ++ara dPv+Ga+gvi++lqq+l+++k ONIVA01G22790.1 11 PCAACAHQGRpSCPAGCPLAPYFPADRPERFEYANLLFGVDGILRRLEAAGPDTvtRRATMASIVFVSDARAADPVHGAYGVIRNLQQELASVK 104 7*********9***************************************555446************************************** PP DUF260 92 aelallkee 100 ae+a+++++ ONIVA01G22790.1 105 AEIAAIRQK 113 ****99886 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 17.068 | 10 | 114 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 2.4E-28 | 11 | 111 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 130 aa Download sequence Send to blast |
MADPPPPHHP PCAACAHQGR PSCPAGCPLA PYFPADRPER FEYANLLFGV DGILRRLEAA 60 GPDTVTRRAT MASIVFVSDA RAADPVHGAY GVIRNLQQEL ASVKAEIAAI RQKQQQAQQP 120 PPALEDGPTN |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 8e-13 | 11 | 109 | 11 | 106 | LOB family transfactor Ramosa2.1 |
5ly0_B | 8e-13 | 11 | 109 | 11 | 106 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | CP012609 | 0.0 | CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_025878934.1 | 4e-78 | LOB domain-containing protein 22-like | ||||
TrEMBL | A0A0E0FND8 | 9e-89 | A0A0E0FND8_ORYNI; Uncharacterized protein | ||||
TrEMBL | A2WRN6 | 9e-89 | A2WRN6_ORYSI; Uncharacterized protein | ||||
STRING | ONIVA01G22790.1 | 2e-89 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP15375 | 11 | 18 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G13850.1 | 5e-18 | LOB domain-containing protein 22 |