PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA01G22620.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family LBD
Protein Properties Length: 348aa    MW: 37793.4 Da    PI: 4.5357
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA01G22620.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26069.86e-2222113199
           DUF260   1 aCaaCkvlrrkCakd.CvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 
                      +CaaCk+lrr+C+++ C lap+fpa+qp++++ v++ ++  +          e  +d++ss+vyeAea+ rdPv G +gv+ +l+ ++ +++a+
  ONIVA01G22620.1  22 RCAACKFLRRACSPEeCRLAPHFPASQPERLQSVERCWSWLTR--------AEYLDDILSSIVYEAEAWGRDPVWGPTGVVGALELEIGTARAD 107
                      6***********9877*******************99876444........455677************************************* PP

           DUF260  94 lallke 99 
                      la+l+ 
  ONIVA01G22620.1 108 LAVLQG 113
                      *99876 PP
2DUF260112.43e-35166257191
           DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlk 91 
                      +CaaC++l r+C ++C lapyfpa q p++f nvh+lF+ +nvl++++++++eer+d+m+++vyeA+a+ardP yG++gv+++l+++l++++
  ONIVA01G22620.1 166 RCAACRYLSRSCWPECLLAPYFPAGQpPAQFGNVHRLFRLNNVLRMMEETRREERDDLMAAIVYEADAWARDPRYGVAGVVRSLTNELARVR 257
                      6***********************9978************************************************************9886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508919.69321115IPR004883Lateral organ boundaries, LOB
PfamPF031953.9E-1822112IPR004883Lateral organ boundaries, LOB
PROSITE profilePS5089119.221165267IPR004883Lateral organ boundaries, LOB
PfamPF031951.7E-28166257IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
MAEPSRSTSS GAAKKPSPRN PRCAACKFLR RACSPEECRL APHFPASQPE RLQSVERCWS  60
WLTRAEYLDD ILSSIVYEAE AWGRDPVWGP TGVVGALELE IGTARADLAV LQGQDQDQPP  120
AVATLPEPEL VVHPPTMAQD ESKPSSTTSS SSGTTTTTTK KKNKPRCAAC RYLSRSCWPE  180
CLLAPYFPAG QPPAQFGNVH RLFRLNNVLR MMEETRREER DDLMAAIVYE ADAWARDPRY  240
GVAGVVRSLT NELARVRLDE IAFHLLGTDE TYDGYKEEDA LAVDPVSGAQ AGIGVLGGSG  300
ADLQENTGIL LGADEPGPGE LAVDPIKDVF DIDRLLAVDD DLSSGTQP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A8e-2116726412108LOB family transfactor Ramosa2.1
5ly0_B8e-2116726412108LOB family transfactor Ramosa2.1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0033080.0AP003308.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:B1129G05.
GenBankAP0149570.0AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015638289.10.0uncharacterized protein LOC107278430
RefseqXP_025882396.10.0uncharacterized protein LOC107278430
TrEMBLA0A0E0FNB80.0A0A0E0FNB8_ORYNI; Uncharacterized protein
STRINGONIVA01G22620.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2318866
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G65620.48e-19LBD family protein