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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ONIVA01G19420.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | GeBP | ||||||||
Protein Properties | Length: 509aa MW: 55531.4 Da PI: 8.3155 | ||||||||
Description | GeBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF573 | 41.7 | 3.1e-13 | 257 | 347 | 3 | 97 |
DUF573 3 fqrlwseeDeivlLqGlidfkaktgkspsd.didafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskki 95 f r w+ +Dei++L +l+d + g p++ f+e v++ ++++s++ eK+r+LK+++++ v +++k+hd + els i ONIVA01G19420.1 257 FGRKWNGNDEIMILEALVDQIRSGGNVPQEpGHPLFHELVQRLEGRTFNHSDVREKVRSLKRRYNDVVLS-----GLAITKDHDLQLHELSCEI 345 6799****************999999998845556777777777789********************999.....789**************** PP DUF573 96 Wg 97 Wg ONIVA01G19420.1 346 WG 347 *8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04504 | 1.0E-12 | 257 | 347 | IPR007592 | Protein of unknown function DUF573 |
Sequence ? help Back to Top |
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Protein Sequence Length: 509 aa Download sequence Send to blast |
MRRRSPPPAA AQPPRPPTRA AESGEEGGDP GKDEVAAPPK GDSALPRSGS GFGSGNAAAP 60 DGPAKSPMKP KKRVTAPPSS DHGSRENLAA GSPSNEVPAP QGDDAAQEDD LPESPPKSKK 120 NRKKKKKALR AGDSGKVAAP DDPAEPTRPQ QDVGEVDGRL AESEQEVPPN AGKAKKKASA 180 QARKKPSAKQ HAAAQEEEDG DLMAEAEEEV APRQGDEEDG KGPLPQRKSK RVAALSGSIC 240 PPDPKRAKIV DAQKPGFGRK WNGNDEIMIL EALVDQIRSG GNVPQEPGHP LFHELVQRLE 300 GRTFNHSDVR EKVRSLKRRY NDVVLSGLAI TKDHDLQLHE LSCEIWGRSV AHAGDDKQRC 360 LARDEQSSLA RDEQKSFAGD EEKSLARDEQ SSLARDEQKS FARDEKSLAR DEEKSLASDE 420 QRSFDDMCKQ FPLLAKEIKV LMEGQPAIME LFPRLDSDQV VAIEKKLENL RWIDMKRKKK 480 MAVKMAKIRK GLIYKLEGAV ILADGNMIR |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 118 | 126 | KKNRKKKKK |
2 | 172 | 184 | KAKKKASAQARKK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP002970 | 0.0 | AP002970.2 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0504D03. | |||
GenBank | AP003213 | 0.0 | AP003213.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:OSJNBa0054L14. | |||
GenBank | AP014957 | 0.0 | AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015644071.1 | 0.0 | basic salivary proline-rich protein 2 | ||||
TrEMBL | A0A0E0FM69 | 0.0 | A0A0E0FM69_ORYNI; Uncharacterized protein | ||||
STRING | ONIVA01G19420.1 | 0.0 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP17455 | 9 | 10 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G61730.1 | 5e-07 | DNA-binding storekeeper protein-related transcriptional regulator |