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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ONIVA01G14480.3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | SBP | ||||||||
Protein Properties | Length: 748aa MW: 82827.5 Da PI: 7.3224 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 118.7 | 2.8e-37 | 106 | 183 | 1 | 78 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cqv+gC+++ls+a++y++rhkvCevh+k+ vv ++++e+rfCqqCsrfh l+efDe+k+sCr+rLa+hn+rrrk q ONIVA01G14480.3 106 CCQVDGCTVNLSSARDYNKRHKVCEVHTKSGVVRIKNVEHRFCQQCSRFHFLQEFDEGKKSCRSRLAQHNRRRRKVQV 183 6**************************************************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 4.7E-28 | 101 | 168 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 30.248 | 104 | 181 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 5.23E-35 | 105 | 185 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 1.1E-28 | 107 | 180 | IPR004333 | Transcription factor, SBP-box |
CDD | cd00204 | 1.36E-4 | 561 | 626 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0016021 | Cellular Component | integral component of membrane | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 748 aa Download sequence Send to blast |
MSSGLKKKGL EWDLNDWRWD SNLFLATPSN ASPSKCSRRE LGRAEGEIDF GVVDKRRRVS 60 PEDDDGEECI NAATTNGDDG QISGQRGRSS EDEMPRQGAC SSSGPCCQVD GCTVNLSSAR 120 DYNKRHKVCE VHTKSGVVRI KNVEHRFCQQ CSRFHFLQEF DEGKKSCRSR LAQHNRRRRK 180 VQVQAASGPS EQINGPNYLT NLVKNLAALA GTQRNQDMLK NANSAAIASH TGNYVAKGNS 240 LHDSRPHIPV GTESTAEEPT VERRVQNFDL NDAYVEGDEN RTDKIVFKLF GKEPNDFPSD 300 LRAQILSWLS NCPSDIESYI RPGCIILTIY MRLPNWMWDK LAADPAHWIQ KLISLSTDTL 360 WRTGWMYARV QDYLTLSCNG NLILASPWQP AIGNKHQILF ITPIAVACSS TANFSVKGLN 420 IAQPTTKLLC IFGGKYLIQE ATEKLLDDTK MQRGPQCLTF SCSFPSTSGR GFIEVEDHDQ 480 SSLSFPFVVA EEDKLLDTLF QGGVDLDVQS TVEFVLKQDL VFVAVNKRSK PLIDFLLTYT 540 TSSAPMDGTE SAAPAQFLFT PDIAGPSDIT PLHIAATYSD TAGVLDALTD DPQQLGIKAW 600 KNARDATGLT PEDYARKRGH ESYIEMVQNK IDSRLPKAHV SVTISSTTST TDFTEKHASQ 660 SKTTDQTAFD VEKGQQISTK PPLSCRQCLP ELAYRHHLNR FLSTRPAVLS LVAIAAVCVC 720 VGLIMQGPPH IGGMRGPFRW NSLRSGPK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 9e-28 | 98 | 180 | 1 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 54 | 58 | KRRRV |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK068471 | 0.0 | AK068471.1 Oryza sativa Japonica Group cDNA clone:J013155F18, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015614292.1 | 0.0 | squamosa promoter-binding-like protein 1 isoform X3 | ||||
Refseq | XP_015614297.1 | 0.0 | squamosa promoter-binding-like protein 1 isoform X3 | ||||
Refseq | XP_025880633.1 | 0.0 | squamosa promoter-binding-like protein 1 isoform X3 | ||||
Swissprot | Q9LGU7 | 0.0 | SPL1_ORYSJ; Squamosa promoter-binding-like protein 1 | ||||
TrEMBL | A0A0E0FKF3 | 0.0 | A0A0E0FKF3_ORYNI; Uncharacterized protein | ||||
STRING | ONIVA01G14480.5 | 0.0 | (Oryza nivara) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G47070.1 | 1e-107 | squamosa promoter binding protein-like 1 |
Publications ? help Back to Top | |||
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