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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ONIVA01G13580.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | Dof | ||||||||
Protein Properties | Length: 489aa MW: 52667.2 Da PI: 7.0259 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 122.4 | 1.5e-38 | 109 | 169 | 2 | 62 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++k+l+cprC+s++tkfCy+nny+++qPr+fC++C+ryWt+GGa+rnvPvG+grr+nk++s ONIVA01G13580.1 109 PDKILPCPRCNSMETKFCYFNNYNVHQPRHFCRNCQRYWTAGGAMRNVPVGAGRRRNKHVS 169 7899******************************************************976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 2.0E-31 | 106 | 166 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 2.4E-31 | 111 | 167 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 28.602 | 113 | 167 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 115 | 151 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 489 aa Download sequence Send to blast |
MAALRQGDDP AIKLFGRTIP LLLDPAAAAA AADEVMPNLG NGVKTNNDLP LVSDKLLIVK 60 GIPFCPNNSK KNDLQGISRP DGRIEIDSMT EDVKTEPDGS VPEKILKKPD KILPCPRCNS 120 METKFCYFNN YNVHQPRHFC RNCQRYWTAG GAMRNVPVGA GRRRNKHVSK YCQAMMTCNN 180 TVAPGDVSDV VHHQVITHGS SLLPATLKEN ETPTEFISEV PPCKSSASIL DIGEPNDTDL 240 VPLASGDNKE EKSCASSVVV SSCSENLMPD NAIMKEPNNR SGCCNGVALP FPTGPALVLP 300 WSLGWNSVAL MPATQCSMQP VLGLKDGIPC PPSWPPQLMV PAPGICTPVV PIPLVPPLWS 360 CFPGWPNGMW NAQCPGGNTT VLPSTAPNKI SCSGSSSLVL GKHSREESLQ EEEKTRNYLW 420 VPKTLRIDDP AEAAKSSIWA TLGIKPDDKG IFKSFQPNVA KNGTAPESPQ ALQANPAAFS 480 RSQSFQETT |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK066984 | 0.0 | AK066984.1 Oryza sativa Japonica Group cDNA clone:J013091E10, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015635234.1 | 0.0 | cyclic dof factor 2 | ||||
TrEMBL | A0A0E0FK21 | 0.0 | A0A0E0FK21_ORYNI; Uncharacterized protein | ||||
STRING | ONIVA01G13580.1 | 0.0 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1434 | 38 | 116 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G39660.2 | 4e-62 | cycling DOF factor 2 |