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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ONIVA01G12770.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | Dof | ||||||||
Protein Properties | Length: 550aa MW: 59862.6 Da PI: 4.6833 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 126.3 | 9.7e-40 | 163 | 222 | 2 | 61 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 ++k+l+cprC+s++tkfCyynny+++qPr+fCk+C+ryWt+GG++rnvPvG+grrk+k+s ONIVA01G12770.1 163 PDKILPCPRCNSMDTKFCYYNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKSKSS 222 7899*****************************************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 1.0E-31 | 160 | 220 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 3.2E-32 | 165 | 221 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 28.863 | 167 | 221 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 169 | 205 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 550 aa Download sequence Send to blast |
MCDKDPGIKL FGRVIPLAPE AEAAAAADGS DQPEAAAAAA EVEPAAQDED HHKETEERKD 60 DEMKVDVPQE EEDNEMKVDA PQEKKDNEVT ADVPEEKGND EMRVDASESI ESIEPVSRST 120 LDNKKEDQGQ MNNVEEKAAS DSKDENEKTA NDESGQDKVL KKPDKILPCP RCNSMDTKFC 180 YYNNYNVNQP RHFCKNCQRY WTAGGTMRNV PVGAGRRKSK SSSLHYRHLL MAPDCMMGSR 240 VEISKSMNPE AFASAHSTPI QPIGRNETVL KFGPEVPLCE SMASVLNIQE QNGTNAAAVP 300 TGENQEDNSC ISSITSHNVL PENAAQVDKN STPVYCNGVG PVPQYYLGAP YMYPWNIGWN 360 NVPMMVPGTS MPESASQSES CSTSSAPWMN MNSPMMPVAS RLSAPPFPYP LVPPALWGCL 420 SSWPATAWNI PWIRTNGGCM SPSSSSNSSC SGNGSPLGKH SRDSSLPLKE DKEEKSLWIP 480 KTLRIDDPDE AAKSSIWATL GIKPGDPGIF KPFQSKGESK GQAASETRPA RALKANPAAL 540 SRSQSFQETS |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP012609 | 0.0 | CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015618265.1 | 0.0 | cyclic dof factor 2 | ||||
TrEMBL | A0A0E0FJQ8 | 0.0 | A0A0E0FJQ8_ORYNI; Uncharacterized protein | ||||
STRING | ONIVA01G12770.1 | 0.0 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1434 | 38 | 116 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G39660.2 | 8e-70 | cycling DOF factor 2 |