PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA01G10670.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB
Protein Properties Length: 993aa    MW: 108624 Da    PI: 4.7701
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA01G10670.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding58.41.6e-185197148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd +l +av+ + g++Wk+Ia++++  Rt+ qc +rwqk+l
  ONIVA01G10670.1 51 KGNWTPEEDAILSRAVQTYNGKNWKKIAECFP-DRTDVQCLHRWQKVL 97
                     79******************************.************986 PP
2Myb_DNA-binding62.39.6e-20103149148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g+W++eEde++v+ v++lG++ W+tIa+ ++ gR +kqc++rw+++l
  ONIVA01G10670.1 103 KGPWSKEEDEIIVQMVNKLGPKKWSTIAQALP-GRIGKQCRERWYNHL 149
                      79******************************.*************97 PP
3Myb_DNA-binding48.52e-15155197145
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      + +WT+eE+  l++a++++G++ W+   + ++ gRt++++k++w+
  ONIVA01G10670.1 155 KEAWTQEEEITLIHAHRMYGNK-WAELTKFLP-GRTDNSIKNHWN 197
                      579*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.3834697IPR017930Myb domain
SuperFamilySSF466893.31E-1647103IPR009057Homeodomain-like
SMARTSM007175.1E-175099IPR001005SANT/Myb domain
PfamPF002492.3E-165197IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.0E-2453114IPR009057Homeodomain-like
CDDcd001671.26E-145397No hitNo description
PROSITE profilePS5129431.18398153IPR017930Myb domain
SuperFamilySSF466899.35E-31100196IPR009057Homeodomain-like
SMARTSM007173.2E-18102151IPR001005SANT/Myb domain
PfamPF002491.2E-17103149IPR001005SANT/Myb domain
CDDcd001676.02E-16105149No hitNo description
Gene3DG3DSA:1.10.10.601.8E-25115156IPR009057Homeodomain-like
PROSITE profilePS5129419.815154204IPR017930Myb domain
SMARTSM007172.2E-14154202IPR001005SANT/Myb domain
PfamPF002496.5E-14155198IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-21157204IPR009057Homeodomain-like
CDDcd001674.15E-11157197No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0032875Biological Processregulation of DNA endoreduplication
GO:0003677Molecular FunctionDNA binding
GO:0003713Molecular Functiontranscription coactivator activity
Sequence ? help Back to Top
Protein Sequence    Length: 993 aa     Download sequence    Send to blast
MMTSDNGKAP DKDGESSGPP LAPQEGEISN EPKRRRPLNG RTTGPTRRST KGNWTPEEDA  60
ILSRAVQTYN GKNWKKIAEC FPDRTDVQCL HRWQKVLNPE LVKGPWSKEE DEIIVQMVNK  120
LGPKKWSTIA QALPGRIGKQ CRERWYNHLN PGINKEAWTQ EEEITLIHAH RMYGNKWAEL  180
TKFLPGRTDN SIKNHWNSSV KKKVNSYMSS GLLTQVSCLP LNEYSANCNS SPAMTQQNSE  240
DSGCFAVREV ENSSGCSQSS LAKVSCSQVH DNTVPLGCDL QVNTNFDKNE AHDSQSSMGS  300
EACYTSAEAV ASALPAVHCH VSSSNLDPDQ HLQEDFAQGL NLDMTIDEMP TVPSFADNQT  360
VCSIENHERS LEPYDVAMEV PLSMLSSDSG AEQKLHFMSE ADFNSPNCLK SELWQDISLQ  420
GLLSGPDAVE ADSFSRSNHQ SDVYSSEADT HFLAPPYMPQ ASNSSSVMGV ADDQSPQMSV  480
PPSLICSNVM TDDAPFDNRP GRKEMPLSQA EVVTQSSSSS GDAEMFANPG CSNDRHVPSS  540
TMESIPECGD QQVTNAEEPE ASLEKEPSLT QSVTAPDEQD KGALFYEPPR FPSLDVPFVS  600
CDLVTSGDLQ EFSPLGIRQL MHSTMNVCTP MRLWGSPTHD ESTGVLLKSA AKSFICTPSI  660
LKKRHRDLLS PIPDKRIEKK YGTEKDRGVS DTSSTGIQTS SINATKDDAL ITTVLRIERS  720
ASSKSLEKKL VFSDENKENL GYTTEQTKDG QSAGNDEHMD EQTTGERSSA TNVATNDDLS  780
GNLQPAGILI EHSGDDPISP DYGKNTMNQK LNTNVKSLSV CKEGVCAKSK PTELIVEKSS  840
PCINVDYEYV NILADTPGIK RGLESPSAWK SPWFVDMHFQ GSYFTSPADS YDALGLMKQI  900
NVQTAAALVE AREVLASGGQ CDNISSDKEN TGNPDAKKEP GTTKLQTKIM AEGRVLDFEC  960
TTPVRSSDKN AGSSLGRYLS SPIPSSHLLK SFR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C1e-65512046159MYB PROTO-ONCOGENE PROTEIN
1h89_C1e-65512046159MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00505DAPTransfer from AT5G11510Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3186010.0AK318601.1 Oryza sativa Japonica Group cDNA, clone: J100066E24, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015625869.10.0transcription factor MYB3R-1
TrEMBLA0A0E0FIY60.0A0A0E0FIY6_ORYNI; Uncharacterized protein
STRINGONIVA01G10670.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP24953879
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11510.11e-136myb domain protein 3r-4