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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ONIVA01G08650.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 284aa MW: 31153.1 Da PI: 9.2107 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 99 | 1.9e-31 | 49 | 98 | 1 | 50 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva+i+fss+g+lyey+ ONIVA01G08650.1 49 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYA 98 79***********************************************8 PP | |||||||
2 | K-box | 101.7 | 1e-33 | 117 | 212 | 4 | 99 |
K-box 4 ssgks.leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrk 96 s++ ++e +a+++qqe++kL+++i++Lq+ +R ++G++++++sl++L+q+e++Lek++ kiR++Knell++++e++qk+e elq++n++Lr+ ONIVA01G08650.1 117 SNS-GtVAEVNAQHYQQESSKLRQQISSLQNANRTIVGDSINTMSLRDLKQVENRLEKGIAKIRARKNELLYAEVEYMQKREVELQNDNMYLRS 209 333.25999************************************************************************************* PP K-box 97 kle 99 k+ ONIVA01G08650.1 210 KVV 212 986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 1.1E-42 | 41 | 100 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 34.132 | 41 | 101 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 8.30E-46 | 42 | 115 | No hit | No description |
SuperFamily | SSF55455 | 5.23E-33 | 42 | 113 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 6.3E-33 | 43 | 63 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 43 | 97 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.2E-26 | 50 | 97 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 6.3E-33 | 63 | 78 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 6.3E-33 | 78 | 99 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 1.5E-24 | 126 | 211 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 14.079 | 127 | 217 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0048366 | Biological Process | leaf development | ||||
GO:0048440 | Biological Process | carpel development | ||||
GO:0048443 | Biological Process | stamen development | ||||
GO:0048497 | Biological Process | maintenance of floral organ identity | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 284 aa Download sequence Send to blast |
MMSMMTDLSC GPSSMTELTA AAAPAGSGSS AAVAAGSSEK MGRGKIEIKR IENTTNRQVT 60 FCKRRNGLLK KAYELSVLCD AEVALIVFSS RGRLYEYANN SVKSTVERYK KANSDTSNSG 120 TVAEVNAQHY QQESSKLRQQ ISSLQNANRT IVGDSINTMS LRDLKQVENR LEKGIAKIRA 180 RKNELLYAEV EYMQKREVEL QNDNMYLRSK VVENERGQQP LNMMGAASTS EYDHMELSSS 240 EHHAAASALR PSAAANYPST WAAAGLQLVL MKSEGVDTRG YVTA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 7e-22 | 41 | 128 | 1 | 91 | MEF2C |
5f28_B | 7e-22 | 41 | 128 | 1 | 91 | MEF2C |
5f28_C | 7e-22 | 41 | 128 | 1 | 91 | MEF2C |
5f28_D | 7e-22 | 41 | 128 | 1 | 91 | MEF2C |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in the development of floral organs. Acts as C-class protein in association with MADS58. Involved in the control of lodicule number (whorl 2), stamen specification (whorl 3) and floral meristem determinacy (whorl 4), but not in the regulation of carpel morphogenesis. Plays a more predominant role in controlling lodicule development and in specifying stamen identity than MADS58. {ECO:0000269|PubMed:11828031, ECO:0000269|PubMed:16326928, ECO:0000269|PubMed:9869408}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00609 | ChIP-seq | Transfer from AT4G18960 | Download |
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Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FJ750940 | 0.0 | FJ750940.1 Oryza sativa clone KCS254F12 MADS-box transcription factor 3 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015632498.1 | 1e-171 | MADS-box transcription factor 3 isoform X2 | ||||
Swissprot | Q40704 | 1e-140 | MADS3_ORYSJ; MADS-box transcription factor 3 | ||||
TrEMBL | A0A0E0FI66 | 0.0 | A0A0E0FI66_ORYNI; Uncharacterized protein | ||||
STRING | ONIVA01G08650.1 | 0.0 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP649 | 37 | 144 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G18960.1 | 4e-99 | MIKC_MADS family protein |
Publications ? help Back to Top | |||
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