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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ONIVA01G02990.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | RAV | ||||||||
Protein Properties | Length: 369aa MW: 39652.9 Da PI: 10.3025 | ||||||||
Description | RAV family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 42 | 2.3e-13 | 68 | 116 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+ykGV + +grW A+I++ r +r++lg+f +e Aa+a++ a+++++g ONIVA01G02990.1 68 SRYKGVVPQP-NGRWGAQIYE------RhARVWLGTFPDEEAAARAYDVAALRYRG 116 78****9888.8*********......44*************************98 PP | |||||||
2 | B3 | 95.1 | 4.6e-30 | 183 | 281 | 1 | 86 |
EEEE-..-HHHHTT-EE--HHH.HTT.............---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.............ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvv 81 f+k+ tpsdv+k++rlv+pk++ae+h + +++ l +ed +g++W+++++y+++s++yvltkGW++Fv+++gL++gD++v ONIVA01G02990.1 183 FEKAVTPSDVGKLNRLVVPKQHAEKHfplrraassdsasAAATGKGVLLNFEDGEGKVWRFRYSYWNSSQSYVLTKGWSRFVREKGLRAGDTIV 276 89****************************99998888755566999*********************************************** PP EEE-S CS B3 82 Fkldg 86 F+++ ONIVA01G02990.1 277 FSRSA 281 *9664 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 1.63E-17 | 68 | 124 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 1.5E-8 | 68 | 116 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 5.40E-14 | 68 | 124 | No hit | No description |
PROSITE profile | PS51032 | 22.049 | 69 | 124 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 9.2E-24 | 69 | 130 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 6.9E-21 | 69 | 124 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:2.40.330.10 | 5.4E-39 | 178 | 298 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 4.71E-30 | 180 | 292 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 4.00E-28 | 181 | 280 | No hit | No description |
SMART | SM01019 | 1.7E-23 | 183 | 295 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 13.902 | 183 | 295 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.8E-27 | 183 | 281 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 369 aa Download sequence Send to blast |
MGVVSFSSTS SGASTATTES GGAVRMSPEP VVAVAAAAQQ LPVVKGVDSA DEVVTSKPAA 60 AAVAQQSSRY KGVVPQPNGR WGAQIYERHA RVWLGTFPDE EAAARAYDVA ALRYRGRDAA 120 TNFPGAAASA AELAFLAAHS KAEIVDMLRK HTYADELRQG LRRGRGMGAR AQPTPSWARE 180 PLFEKAVTPS DVGKLNRLVV PKQHAEKHFP LRRAASSDSA SAAATGKGVL LNFEDGEGKV 240 WRFRYSYWNS SQSYVLTKGW SRFVREKGLR AGDTIVFSRS AYGPDKLLFI DCKKNNAAVA 300 ATTTCAGDER PTTTTSGAEP RVVRLFGVDI AGGDCRKRER AVEMGQEAFL LKRQCVVHQR 360 TPVLGALLL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wid_A | 2e-49 | 180 | 293 | 11 | 115 | DNA-binding protein RAV1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP012609 | 0.0 | CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015622259.1 | 0.0 | AP2/ERF and B3 domain-containing protein Os01g0141000 | ||||
Swissprot | Q9AWS0 | 0.0 | Y1410_ORYSJ; AP2/ERF and B3 domain-containing protein Os01g0141000 | ||||
TrEMBL | A0A0E0FG21 | 0.0 | A0A0E0FG21_ORYNI; Uncharacterized protein | ||||
TrEMBL | A2WKH7 | 0.0 | A2WKH7_ORYSI; Uncharacterized protein | ||||
STRING | ONIVA01G02990.1 | 0.0 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP456 | 38 | 203 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G25560.1 | 4e-79 | RAV family protein |
Publications ? help Back to Top | |||
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