PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI06G05550.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 135aa    MW: 14566.2 Da    PI: 10.4406
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI06G05550.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP244.44.2e-142441055
              AP2 10 kkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                     +k+g+WvAeIr+p   +kr r++lg++ ta  Aa+a++ a  +l+g
  OMERI06G05550.1  2 RKWGKWVAEIREP---NKRSRIWLGSYSTAVAAARAYDTAVFYLRG 44
                     46**********9...336*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003801.1E-28158IPR001471AP2/ERF domain
CDDcd000186.35E-22154No hitNo description
Gene3DG3DSA:3.30.730.103.7E-26153IPR001471AP2/ERF domain
PROSITE profilePS5103219.572152IPR001471AP2/ERF domain
SuperFamilySSF541713.66E-18254IPR016177DNA-binding domain
PfamPF008475.0E-8244IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 135 aa     Download sequence    Send to blast
MRKWGKWVAE IREPNKRSRI WLGSYSTAVA AARAYDTAVF YLRGRSARLN FPDQLDGAGG  60
GGGAGASAED HRELTAAAIR KKAAEVGARV DAQHSVVGAA APVPLQPPQP PPPQRRRTKN  120
PDLNREPTPD TSDDE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-122602180Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126140.0CP012614.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 6 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015641200.11e-67ethylene-responsive transcription factor RAP2-9
SwissprotO221744e-39ERF08_ARATH; Ethylene-responsive transcription factor ERF008
TrEMBLA0A0E0DXM45e-92A0A0E0DXM4_9ORYZ; Uncharacterized protein
STRINGOBART06G04460.11e-69(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP39433075
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36900.12e-27related to AP2 10
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Sazegari S,Niazi A,Ahmadi FS
    A study on the regulatory network with promoter analysis for Arabidopsis DREB-genes.
    Bioinformation, 2015. 11(2): p. 101-6
    [PMID:25848171]