PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI05G19480.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 190aa    MW: 20018.4 Da    PI: 10.1626
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI05G19480.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.15.1e-192271255
              AP2  2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                     +y+GVr ++ +gr++AeIrd ++    ++r++lg+++t+ eAa a+++a+ +l+g
  OMERI05G19480.1 22 HYRGVRKRP-WGRYAAEIRDpWK----KTRVWLGTYDTPVEAALAYDRAAVALRG 71
                     6********.**********883....5**********************99997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.18E-282178No hitNo description
SMARTSM003804.2E-342285IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.4E-292279IPR001471AP2/ERF domain
PfamPF008473.4E-122271IPR001471AP2/ERF domain
SuperFamilySSF541712.48E-212279IPR016177DNA-binding domain
PROSITE profilePS5103221.4962279IPR001471AP2/ERF domain
PRINTSPR003671.0E-92334IPR001471AP2/ERF domain
PRINTSPR003671.0E-94561IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 190 aa     Download sequence    Send to blast
MELDMGAGGG GGVVGGGRAE AHYRGVRKRP WGRYAAEIRD PWKKTRVWLG TYDTPVEAAL  60
AYDRAAVALR GVKARTNFGS GSSGGGVGGH GHGHSHSHAQ LPQLHHRMHP PRPPQGPSHF  120
GGLDISHPSP WHYVYFPARV QAMAPAASGH VAAHVAASLP STTLELRTGP SAGELPFDLN  180
EPPPSLLFGS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A6e-202278562ATERF1
3gcc_A6e-202278562ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00645PBMTransfer from LOC_Os05g41760Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1085230.0AC108523.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OJ1118_C04, complete sequence.
GenBankAK2423930.0AK242393.1 Oryza sativa Japonica Group cDNA, clone: J080064G22, full insert sequence.
GenBankAP0149610.0AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
GenBankCP0126130.0CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015638389.13e-93ethylene-responsive transcription factor 12
TrEMBLA0A0E0DTI01e-132A0A0E0DTI0_9ORYZ; Uncharacterized protein
STRINGOMERI05G18590.11e-133(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP10337465
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28360.14e-24ERF domain protein 12