PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | OMERI05G17500.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 264aa MW: 27983.5 Da PI: 5.4496 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 58.6 | 1.5e-18 | 67 | 115 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 y+GVr+++ +g+Wv+eIr+p + r kr++lg+fg+a +Aa a+++a+ ++ g OMERI05G17500.2 67 YRGVRQRR-WGKWVSEIREP---N-RgKRHWLGTFGSAVDAALAYDKAAASILG 115 9****998.**********8...3.35**********************98876 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 21.101 | 66 | 123 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 7.5E-34 | 66 | 129 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 6.9E-29 | 66 | 124 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 4.73E-19 | 67 | 124 | No hit | No description |
SuperFamily | SSF54171 | 2.81E-20 | 67 | 123 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 1.4E-11 | 67 | 114 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.3E-11 | 67 | 78 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.3E-11 | 105 | 125 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 264 aa Download sequence Send to blast |
MAAGEGDVGM EVETKAPAMP PPPPASSSAA RKKKQARAKN GDTPEPDAAG GARARASRRA 60 KRGPGSYRGV RQRRWGKWVS EIREPNRGKR HWLGTFGSAV DAALAYDKAA ASILGPRAVL 120 NFPAFSPPAA TIAAPEQREP PFCSPATTAA AAAATAHEQR QTPCCSPAAV AGSGGGAVFE 180 ERDVKPVVLP LPLPAILQGG GGTEAMAQHW DWEWDASRPE LEMFECLDDI AMYLDVDAVM 240 TTRDCKVEEL DADIVDSPLW TLSD |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 2e-16 | 66 | 123 | 2 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
2gcc_A | 1e-16 | 67 | 123 | 6 | 63 | ATERF1 |
3gcc_A | 1e-16 | 67 | 123 | 6 | 63 | ATERF1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcriptional activator that binds to the DNA sequence 5'-[AG]CCGAC-3' of the cis-acting dehydration-responsive element (DRE). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AK102559 | 0.0 | AK102559.1 Oryza sativa Japonica Group cDNA clone:J033097H15, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015638470.1 | 1e-121 | dehydration-responsive element-binding protein 2D | ||||
Refseq | XP_015638471.1 | 1e-121 | dehydration-responsive element-binding protein 2D | ||||
Swissprot | Q65WX1 | 1e-122 | DRE2D_ORYSJ; Dehydration-responsive element-binding protein 2D | ||||
TrEMBL | A0A0E0DST8 | 0.0 | A0A0E0DST8_9ORYZ; Uncharacterized protein | ||||
STRING | OMERI05G16600.3 | 0.0 | (Oryza meridionalis) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP14102 | 22 | 26 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G05410.2 | 7e-16 | DRE-binding protein 2A |
Publications ? help Back to Top | |||
---|---|---|---|
|