PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI02G09240.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family Trihelix
Protein Properties Length: 704aa    MW: 74529.4 Da    PI: 6.1196
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI02G09240.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix100.71.2e-31519603186
         trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                      rW+k+ev aLi++r+ +e+r+++  lk+plWeevs++m++ g++r++k+Ckekwen+nk+++k ke+ kkr + + +tcpyfd+l+
  OMERI02G09240.1 519 RWPKHEVEALIRVRTGLEDRFQEPGLKGPLWEEVSARMAAAGYRRNAKRCKEKWENINKYFRKAKESGKKR-PAHAKTCPYFDELD 603
                      8********************************************************************98.99999*******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500907.073512576IPR017877Myb-like domain
CDDcd122031.85E-30518583No hitNo description
PfamPF138373.6E-23518605No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 704 aa     Download sequence    Send to blast
MQSGYGGVSE FQQYIMDPGA FAMSAPPQPA QAAAAAAAAA AAAAGGQELG APFRYQPLHH  60
HALPQHHHHH HPPPQMPPHL AHFGGAGGIP FTQQLLHQAA AAGHHPHLQL FHEQHHHQKH  120
QQQPPPPARW APQQQHHHHP HHHLGLDVEA AVPESSGAGA GSTASGAAAP PGVPPFLAAA  180
MSFKLGVDGG GGSGATGGTD DALNDGGGAG SGMMLHGGGG GGGGGDDEAA TESRLRRWPG  240
DEETSIKEPT WRPLDIDYIH SSSSSKRAAP KDKPATPDSP APPPPANYFK NKPDDNAAAA  300
SAGAVNYKLF SELEAIYKPG SGGAQTGSGS GLTGDDNAML APPMADLPDA AAADPPHLNT  360
SETSAGEDAH AVVQPQPQPS GADAARRKRK RRRQEQLSAS ASFFERLVQR LMEHQESLHR  420
QFLDTMERRE RERAARDEAW RRQEADKFAR EAAARAQDRA SAAARESAII AYLEKISGET  480
ITLPPPAANP APGADEQDGV GKEVVAYDGE GSLQLSSSRW PKHEVEALIR VRTGLEDRFQ  540
EPGLKGPLWE EVSARMAAAG YRRNAKRCKE KWENINKYFR KAKESGKKRP AHAKTCPYFD  600
ELDRLYSRSG GGGGGSSSAG GNGGEEAKGS SELLDAVVKY PDVRCAPPGF PFDGEQNEEG  660
RAKEDGDEAH HDGDGDGDEE DVGVGVGRAT DDHDDQVDES HDDH
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1385390RRKRKR
2386391RKRKRR
3386392RKRKRRR
4387392KRKRRR
5388392RKRRR
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00651PBMTransfer from LOC_Os02g01380Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126100.0CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025879174.10.0trihelix transcription factor GTL1
TrEMBLA0A0E0CHM80.0A0A0E0CHM8_9ORYZ; Uncharacterized protein
STRINGOMERI02G09220.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP63993547
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76890.24e-39Trihelix family protein