PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI01G37050.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 197aa    MW: 21363.9 Da    PI: 7.0417
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI01G37050.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.61.3e-17354156
              AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                     ++ykGVr++k +g+Wv+eIr p++   r r++lg+++++e+Aa+a +aa   l+g+
  OMERI01G37050.1  3 KKYKGVRRRK-WGKWVSEIRLPNS---RDRIWLGSYDSPEKAARAFDAAFVTLRGH 54
                     59*****998.**********933...5********************98888876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.71E-24366No hitNo description
Gene3DG3DSA:3.30.730.108.8E-27466IPR001471AP2/ERF domain
SuperFamilySSF541711.57E-18466IPR016177DNA-binding domain
PROSITE profilePS5103221.799464IPR001471AP2/ERF domain
SMARTSM003801.1E-28470IPR001471AP2/ERF domain
PfamPF008471.0E-10452IPR001471AP2/ERF domain
PRINTSPR003676.0E-9516IPR001471AP2/ERF domain
PRINTSPR003676.0E-92743IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001944Biological Processvasculature development
GO:0002213Biological Processdefense response to insect
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009611Biological Processresponse to wounding
GO:0051301Biological Processcell division
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 197 aa     Download sequence    Send to blast
MEKKYKGVRR RKWGKWVSEI RLPNSRDRIW LGSYDSPEKA ARAFDAAFVT LRGHGAAGAD  60
LNFPDSPPSC DARSCDPRQV QAAALSHANR AHVTPQQAAA ALMSPPSLSP PGLATGSEVV  120
APAVRADGSI DWRPVMAHPP PLYSPPGGWG GGHAYDFLQP PPPLPPLPSC DDDMVDVVDE  180
SSASLWSFDT RDSYFRY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-124641472Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1511KGVRRRK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00601PBMTransfer from AT1G74930Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0042570.0AP004257.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1369_G08.
GenBankAP0149580.0AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015624935.11e-111ethylene-responsive transcription factor ERF018
TrEMBLA0A0E0CBE41e-140A0A0E0CBE4_9ORYZ; Uncharacterized protein
STRINGOMERI01G36450.11e-123(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP86132144
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19210.13e-34ERF family protein