PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 93535 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus
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Family | MYB_related | ||||||||
Protein Properties | Length: 436aa MW: 48424.5 Da PI: 8.5912 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 23.2 | 1.6e-07 | 378 | 429 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT......TTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg......kgRtlkqcksrwqk 46 + +WT E l +v+++G g+W++I + + Rt+ ++k++w++ 93535 378 KVKWTDAEVTCLHLGVQKYGIGNWAKILNDPTltngfhTSRTGVHLKDKWRT 429 579***************************99999***************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 0.0011 | 377 | 433 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 2.11E-12 | 377 | 430 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 6.33 | 378 | 431 | IPR017877 | Myb-like domain |
Gene3D | G3DSA:1.10.10.60 | 4.6E-11 | 378 | 431 | IPR009057 | Homeodomain-like |
CDD | cd11660 | 1.54E-18 | 379 | 432 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 436 aa Download sequence Send to blast |
MQRRERALWS LEHALSSPEI PLDVKVEVKN ACAASLDDET LASCDSLVVR LFDVLSRARD 60 ALIAGEGAMR GNSARACADA LHAVTTRRDA PETLKRRGKD VVEALRGEWC FAAARETRNE 120 GGTSPVRGWK AMENFWMRWR TLTIGDGGLG DGSALGTKAK RTYDMVERAE SDMRLPSDWE 180 SRVPTAEDIA QDLQTLFTDL CESGELMSFL SVVRNDISSG RYKVQVRGDG RVARQSGAMT 240 DSIGLEPHLE GLGRKLRAEA TRHRQEPPLG ALTAVPESFS SPPKRVHIAA QRKKNARTVE 300 WDSQNDQPDD NDKEEEDKDE HEDIAPTQQT PRAKPSPLTN LSWEEVGYRT PRANLPAISP 360 APRAALKSPS TRKKLHVKVK WTDAEVTCLH LGVQKYGIGN WAKILNDPTL TNGFHTSRTG 420 VHLKDKWRTI QRQAR* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP000592 | 0.0 | CP000592.1 Ostreococcus lucimarinus CCE9901 chromosome 12, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_001420640.1 | 0.0 | predicted protein | ||||
TrEMBL | A4S5N4 | 0.0 | A4S5N4_OSTLU; Uncharacterized protein | ||||
STRING | ABO98933 | 0.0 | (Ostreococcus 'lucimarinus') |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP13469 | 3 | 3 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G49850.1 | 6e-09 | telomere repeat binding factor 3 |
Link Out ? help Back to Top | |
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Phytozome | 93535 |