PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 8087 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus
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Family | MYB_related | ||||||||
Protein Properties | Length: 158aa MW: 18458.5 Da PI: 6.8081 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 44.1 | 4.9e-14 | 91 | 135 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE++l++ + +++G+g+W++I+r + Rt+ q+ s+ qky 8087 91 PWTEEEHKLFLLGLNKFGKGDWRSISRNFVISRTPTQVASHAQKY 135 8*****************************99************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 5.13E-5 | 1 | 58 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 40 | 1 | 53 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS50090 | 5.854 | 1 | 51 | IPR017877 | Myb-like domain |
PROSITE profile | PS51294 | 16.927 | 84 | 140 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.31E-17 | 86 | 141 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.5E-12 | 88 | 138 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 8.7E-12 | 88 | 134 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 2.1E-17 | 88 | 138 | IPR006447 | Myb domain, plants |
CDD | cd00167 | 2.79E-9 | 91 | 136 | No hit | No description |
Pfam | PF00249 | 1.6E-12 | 91 | 135 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0046686 | Biological Process | response to cadmium ion | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 158 aa Download sequence Send to blast |
WTFEEDKFFE TSLAQYDGSW PITGDDYWGQ LQEQMPQKGV HDLKNRFSKL EEDVRNIEAG 60 LVQLPDYDDD SDHHSKAAPK TGEQERRKGV PWTEEEHKLF LLGLNKFGKG DWRSISRNFV 120 ISRTPTQVAS HAQKYFIRLN SMSKKDNKRR SSIHDITS |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP000583 | 1e-138 | CP000583.1 Ostreococcus lucimarinus CCE9901 chromosome 3, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_001416963.1 | 1e-115 | predicted protein, partial | ||||
Swissprot | Q8S9H7 | 6e-50 | DIV_ANTMA; Transcription factor DIVARICATA | ||||
TrEMBL | A4RUH9 | 1e-114 | A4RUH9_OSTLU; Uncharacterized protein (Fragment) | ||||
STRING | ABO95256 | 1e-115 | (Ostreococcus 'lucimarinus') |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP322 | 15 | 29 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G38090.1 | 5e-43 | MYB family protein |
Link Out ? help Back to Top | |
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Phytozome | 8087 |
Publications ? help Back to Top | |||
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