PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | 6612 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus
|
||||||||
Family | MYB_related | ||||||||
Protein Properties | Length: 239aa MW: 27060.5 Da PI: 9.799 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 40 | 8.8e-13 | 13 | 57 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r +WT+ E++++++a +++ + Wk+I +++g + q++s+ qk+ 6612 13 RVSWTPKEHQRFLRALELYSRD-WKRIEEYVG-SKDVVQIRSHAQKH 57 679****************977.*********.************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 7.48E-15 | 8 | 61 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 14.269 | 8 | 62 | IPR017930 | Myb domain |
SMART | SM00717 | 2.2E-9 | 12 | 60 | IPR001005 | SANT/Myb domain |
TIGRFAMs | TIGR01557 | 4.6E-14 | 12 | 60 | IPR006447 | Myb domain, plants |
Gene3D | G3DSA:1.10.10.60 | 3.1E-6 | 13 | 57 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.1E-10 | 13 | 57 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 5.88E-8 | 15 | 58 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 239 aa Download sequence Send to blast |
KKPRKPYTQT RARVSWTPKE HQRFLRALEL YSRDWKRIEE YVGSKDVVQI RSHAQKHFLK 60 LMKSGQGDQM PPPRHKKSNH ADGERAVNYV PGMSQAMRLR LQVEPDGSLP VAPKRAPGVP 120 PPLQNSTNTP DFATVYGFLA DLFKVNEART EPEHALRLSH TTPLENMTAI DRETALLLIR 180 NLRNNMCSKQ MWQQQSDLLE DGCSTFLDAQ DAERLRPKTF GKVSDASPDD NSSGDGSGD |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | CP000584 | 0.0 | CP000584.1 Ostreococcus lucimarinus CCE9901 chromosome 4, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_001417610.1 | 1e-180 | predicted protein, partial | ||||
TrEMBL | A4RWN5 | 1e-179 | A4RWN5_OSTLU; Uncharacterized protein (Fragment) | ||||
STRING | ABO95903 | 1e-180 | (Ostreococcus 'lucimarinus') |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP454 | 14 | 27 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G01520.1 | 2e-34 | MYB_related family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | 6612 |