PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 5960 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus
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Family | MYB_related | ||||||||
Protein Properties | Length: 275aa MW: 29506.2 Da PI: 10.9432 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 46.9 | 6.2e-15 | 29 | 73 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r +W+ eE+ l+v+ k++G W++I +++g ++t+ q++s+ qk+ 5960 29 REKWSDEEHALFVESLKKYGRA-WRKIEEHIG-TKTAVQIRSHAQKF 73 789*****************88.*********.************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 3.51E-15 | 23 | 79 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 21.347 | 24 | 78 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.0E-9 | 25 | 77 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 4.6E-15 | 27 | 76 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 1.4E-12 | 28 | 76 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.3E-12 | 29 | 72 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 6.82E-10 | 31 | 74 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009409 | Biological Process | response to cold | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0010243 | Biological Process | response to organonitrogen compound | ||||
GO:0042754 | Biological Process | negative regulation of circadian rhythm | ||||
GO:0043496 | Biological Process | regulation of protein homodimerization activity | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0046686 | Biological Process | response to cadmium ion | ||||
GO:0048574 | Biological Process | long-day photoperiodism, flowering | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 275 aa Download sequence Send to blast |
TTTTTTTTTT TTEGAPVKVR KPYTITKKRE KWSDEEHALF VESLKKYGRA WRKIEEHIGT 60 KTAVQIRSHA QKFFSKLQKE QAARGSASGS DAPAGSQGDS SKRRGARGST SGSKKSRRSV 120 SPDLNLKIPP ARPKKKPDHP YPKKATSQQP SGGSGEGKST GTAQNMMGSA TQAEHIANAS 180 SSAAVAAVLS VASDKMQTSL QHDLRAGYFG VPPGAGMFAQ PGLFPVQHMM NPYVGMSNPA 240 AGAQNPPQMS NPQQFINYIN FLTNMWRQNA NAMSA |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00103 | PBM | Transfer from AT2G46830 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP000586 | 0.0 | CP000586.1 Ostreococcus lucimarinus CCE9901 chromosome 6, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_001418464.1 | 0.0 | predicted protein, partial | ||||
TrEMBL | A4RYW3 | 0.0 | A4RYW3_OSTLU; Uncharacterized protein (Fragment) | ||||
STRING | ABO96757 | 0.0 | (Ostreococcus 'lucimarinus') |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP454 | 14 | 27 | Representative plant | OGRP114 | 13 | 173 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G17300.1 | 2e-31 | MYB_related family protein |
Link Out ? help Back to Top | |
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Phytozome | 5960 |