PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 37312 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus
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Family | CO-like | ||||||||
Protein Properties | Length: 423aa MW: 45325.6 Da PI: 4.43 | ||||||||
Description | CO-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 20.8 | 8.2e-07 | 28 | 70 | 6 | 39 |
zf-B_box 6 CpeHe...ekelqlfCedCqqllCedClleeHkg......Htv 39 C+ ++ + ++++C +++ +lC+ C H H++ 37312 28 CESCPegaRRAASWYCAQDEAYLCDACDARVHAAnaiaskHER 70 77777444566*****************999955667777765 PP | |||||||
2 | CCT | 67.8 | 3e-23 | 310 | 353 | 1 | 44 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 R ++l+R+keKrk+R+F+K irY+sRKa+A++RpRvKG+Fvk + 37312 310 RLERLKRWKEKRKNRNFNKVIRYQSRKACADNRPRVKGKFVKVS 353 889**************************************976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 8.902 | 23 | 73 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 2.6E-4 | 23 | 73 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 3.46E-6 | 28 | 73 | No hit | No description |
Pfam | PF00643 | 1.8E-5 | 30 | 71 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS51017 | 14.862 | 310 | 352 | IPR010402 | CCT domain |
Pfam | PF06203 | 2.4E-18 | 310 | 352 | IPR010402 | CCT domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009658 | Biological Process | chloroplast organization | ||||
GO:0009909 | Biological Process | regulation of flower development | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 423 aa Download sequence Send to blast |
MAPSDARASA SDRARAEDAT RDATGAACES CPEGARRAAS WYCAQDEAYL CDACDARVHA 60 ANAIASKHER TALGTNGRGV GAHGAEDADS RRMSDAYGDG DDVEVTTDDV IGICDEYLSN 120 PMMPSSSFPV ETLDGAFWDE NLGELDADGI DPESFLRDPL DDEDAAKDGV VNREIDGERS 180 GSKYSDSVGM SKSEIEALRR VGEYASSSGF LGPILDDSAV RFLELNPSYG AFGSPSPESS 240 DMGFESLAGK LSAVAVKREP ESDLDNQTVA SSGAGDANGH SAMADALRSI PEGPPSGSDT 300 YAGLPQPQTR LERLKRWKEK RKNRNFNKVI RYQSRKACAD NRPRVKGKFV KVSSVPDLSK 360 IREAAGQSDD DDAREAEEER DKIAELGLDK GLRAPPSMRK MKKGLVSSAS MPDFSMYNTM 420 DD* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP000584 | 0.0 | CP000584.1 Ostreococcus lucimarinus CCE9901 chromosome 4, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_001417557.1 | 0.0 | predicted protein | ||||
TrEMBL | A4RWC5 | 0.0 | A4RWC5_OSTLU; Uncharacterized protein | ||||
STRING | ABO95850 | 0.0 | (Ostreococcus 'lucimarinus') |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP611 | 11 | 12 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G25440.1 | 5e-12 | B-box type zinc finger protein with CCT domain |
Link Out ? help Back to Top | |
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Phytozome | 37312 |