PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 33434 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus
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Family | CO-like | ||||||||
Protein Properties | Length: 441aa MW: 48294.2 Da PI: 5.9391 | ||||||||
Description | CO-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 22.6 | 2.1e-07 | 2 | 45 | 4 | 41 |
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg.......Htvvp 41 + C+ + + +fC ++ +lC++C H g H++++ 33434 2 PACAACRARDADIFCLADEAFLCATCDARVH-GanavaarHERIT 45 68******99******************999.5577888888765 PP | |||||||
2 | CCT | 49.9 | 1.1e-17 | 271 | 316 | 1 | 44 |
CCT 1 ReaallRYkeKrktRk..FeKkirYesRKavAesRpRvKGrFvkqa 44 R+a+l RY+ Kr++R+ +K +rYe+RK++A+ R RvKGrFvk++ 33434 271 RQAQLDRYRAKRERRLmgLKKVVRYECRKTLADARVRVKGRFVKAN 316 99*************85579***********************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 10.537 | 1 | 46 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 1.9E-7 | 1 | 46 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 2.9E-5 | 2 | 45 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 0.00434 | 15 | 43 | No hit | No description |
Pfam | PF06203 | 7.8E-16 | 271 | 315 | IPR010402 | CCT domain |
PROSITE profile | PS51017 | 10.844 | 271 | 315 | IPR010402 | CCT domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009909 | Biological Process | regulation of flower development | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0048576 | Biological Process | positive regulation of short-day photoperiodism, flowering | ||||
GO:0048579 | Biological Process | negative regulation of long-day photoperiodism, flowering | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 441 aa Download sequence Send to blast |
MPACAACRAR DADIFCLADE AFLCATCDAR VHGANAVAAR HERITVDEWY KRTLEAGLSE 60 AKECGDWKAA ASATASARRE DEDGRGRGTS ESLREKSFSL FKRDDAKTTT HDSTSSMDAT 120 ISAWDVGVFL NLGENGEEDT SPRAPRMSSN SDTMIFDLDD DPLASLLEMP ETESALLFDG 180 DAASISAALE AVADQIQAVS PNQAAAKAYV SKSARDNFTP RPSPLGLGLP AAQRGPAETV 240 GSYPPGAFPP IMMPMSSDLF GIPRRVVSKE RQAQLDRYRA KRERRLMGLK KVVRYECRKT 300 LADARVRVKG RFVKANPDEK TSALKSFQSC PDLSALVEDE DNAKPLSFAP MKHTTLDDQQ 360 LHQQNSKRRI SDDRLSNSDA SHDDKLDVQS MRYEILRDSG APALHPPTIP ETLPLPSGLR 420 RTKQMRHCQS EINLMDLAGY * |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP000589 | 0.0 | CP000589.1 Ostreococcus lucimarinus CCE9901 chromosome 9, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_001419738.1 | 0.0 | predicted protein | ||||
TrEMBL | A4S2F2 | 0.0 | A4S2F2_OSTLU; Uncharacterized protein | ||||
STRING | ABO98031 | 0.0 | (Ostreococcus 'lucimarinus') |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP7410 | 5 | 5 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02380.1 | 8e-10 | CONSTANS-like 2 |
Link Out ? help Back to Top | |
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Phytozome | 33434 |