PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 32661 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus
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Family | MYB_related | ||||||||
Protein Properties | Length: 596aa MW: 68122.4 Da PI: 5.1815 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 31.7 | 3.5e-10 | 269 | 317 | 2 | 47 |
SSS-HHHHHHHHHHHHHTTTT....-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGgg....tWktIartmgkgRtlkqcksrwqky 47 g+WT eE++++ d ++ l+gg W t ++ ++ gR ++qc ++++++ 32661 269 GKWTDEEHQKFMDIIASLPGGkanyEWGTFSKGIP-GRVGYQCSNYYRTL 317 89*********************************.***********987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 7.677 | 263 | 318 | IPR017877 | Myb-like domain |
Gene3D | G3DSA:1.10.10.60 | 3.2E-8 | 268 | 326 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 4.93E-8 | 268 | 325 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 4.3E-7 | 269 | 317 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 0.00533 | 270 | 318 | No hit | No description |
SuperFamily | SSF57850 | 2.56E-7 | 424 | 487 | No hit | No description |
Gene3D | G3DSA:3.30.40.10 | 3.3E-6 | 434 | 489 | IPR013083 | Zinc finger, RING/FYVE/PHD-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 596 aa Download sequence Send to blast |
MSENDMAVAN APVDASCAKS AIEGASGDAR AAAAVPAWMA DDDDDGLTEE QRRVIAERVA 60 ALQNRFKKFE EKTTREKVEE LMLGNADKGL TEREADMVLR VCNGNEFEAS DRLGEAEDGE 120 SFLMSIRFMI QEEDALKRRS QSSKAAQTAN ERFNKRIERL RKRRMSFGGD EEDEEDAGEP 180 EEFFETEYIL EESLGVQFVR HTKKHVNVKR LRLDDAIARA QVAEELAEPE VNPYEGWSEA 240 RIKAWKNREK NENQYYYRFN EPGEMQANGK WTDEEHQKFM DIIASLPGGK ANYEWGTFSK 300 GIPGRVGYQC SNYYRTLVKN NIIQDENYMV DPVSGDLRFN FKNKGFTRAE PVEGEPRMVM 360 VKKVIKQKKP KAPKQPKKAK KKVKKSDDKA FHCTIRAGPV RSSGRATKKT YTDGGDDDED 420 FDDEFEELPV LPGFIDPITR MAIEEPAISP YGHVAGYETW CKILRQPEAP DTCPFTKQPL 480 KRRELIKLTH ENIDQYRSKI VENQQTGENA QVRHLGRGNR VRTPTHPTKG DYLSIKTEEV 540 IFGILFAFMA WKLWQSVRGL FRYWKYVRAP NAPETELEAG AIAFEEDDDE NEKID* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 366 | 384 | QKKPKAPKQPKKAKKKVKK |
2 | 376 | 384 | KKAKKKVKK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP000587 | 0.0 | CP000587.1 Ostreococcus lucimarinus CCE9901 chromosome 7, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_001418705.1 | 0.0 | predicted protein | ||||
TrEMBL | A4S095 | 0.0 | A4S095_OSTLU; Uncharacterized protein | ||||
STRING | ABO96998 | 0.0 | (Ostreococcus 'lucimarinus') |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP7034 | 3 | 3 |
Link Out ? help Back to Top | |
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Phytozome | 32661 |