PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 30541 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus
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Family | MYB_related | ||||||||
Protein Properties | Length: 263aa MW: 28657.3 Da PI: 10.4227 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 27.3 | 8.1e-09 | 178 | 226 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT..TTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg..kgRtlkqcksrwqky 47 r r+++ E e l+++v+++G g+W+ I + + + R++ ++k++w+++ 30541 178 RERFSQSEAEDLIKGVQLFGLGQWAHIKSSFFqdTSRSGVDLKDKWRNL 226 789************************999988**************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54236 | 3.45E-10 | 60 | 154 | IPR029071 | Ubiquitin-related domain |
Gene3D | G3DSA:3.10.20.90 | 2.2E-7 | 63 | 148 | No hit | No description |
CDD | cd01769 | 5.66E-4 | 71 | 139 | No hit | No description |
PROSITE profile | PS51294 | 9.975 | 173 | 231 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.88E-11 | 175 | 228 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.2E-8 | 177 | 229 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.0E-11 | 177 | 227 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.2E-6 | 178 | 226 | IPR001005 | SANT/Myb domain |
CDD | cd11660 | 1.66E-17 | 180 | 227 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 263 aa Download sequence Send to blast |
MTRASKRKAA APVATTKAVA LKEKKGKASV KSAGKQTAND TATSKRRTSD DPYDFDVDQE 60 MYGVTVKWVN KGQTTSEWKF TVPTDATVDA LRGMVHETTG GVLTKDNITL KHKSRTMEPT 120 DAQLGSFGVR DGSDIVLILN NDGQGVPAAP TMVNTQFPGE PVAKKSKKAK DKGGDKKRER 180 FSQSEAEDLI KGVQLFGLGQ WAHIKSSFFQ DTSRSGVDLK DKWRNLVTAS ERPPGFKFRV 240 EYLNDASFLA RVAQVNAESQ AK* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP000583 | 0.0 | CP000583.1 Ostreococcus lucimarinus CCE9901 chromosome 3, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_001416633.1 | 0.0 | predicted protein | ||||
TrEMBL | A4RU94 | 0.0 | A4RU94_OSTLU; Uncharacterized protein | ||||
STRING | ABO94926 | 0.0 | (Ostreococcus 'lucimarinus') |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP7363 | 5 | 5 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G17460.1 | 1e-09 | TRF-like 3 |
Link Out ? help Back to Top | |
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Phytozome | 30541 |