PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 30413 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus
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Family | MYB_related | ||||||||
Protein Properties | Length: 506aa MW: 53399.6 Da PI: 9.416 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 31 | 5.8e-10 | 410 | 459 | 2 | 48 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT....TTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmg....kgRtlkqcksrwqkyl 48 ++W eE e lv++v+q Ggg W+ I +++g ++Rt+ ++k++w+++l 30413 410 NPWALEEAEALVRGVAQCGGGKWADI-KKLGftaiEHRTAVDLKDKWRNLL 459 68***********************9.567779999*************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 13.975 | 404 | 463 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.9E-13 | 406 | 460 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.3E-6 | 408 | 461 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.3E-6 | 410 | 459 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.64E-15 | 410 | 467 | IPR009057 | Homeodomain-like |
CDD | cd11660 | 1.99E-20 | 411 | 460 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0046686 | Biological Process | response to cadmium ion | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 506 aa Download sequence Send to blast |
MATMAPSQTP GCHATRAALR RDGAPGAVRG YRFVNRPDVN GDTDAVDQQM AGFVSEAGPF 60 DADPVLKAAE REILSATKAQ RRAAAERGAL LEHGYGAMLG TGSGSMGNLG MLTASGGSDD 120 DDKASTQSVA YLSGDAASNR SYSPFDVTLD EAAENLLCEF GAPIMDGAIG LIDDEGAEIF 180 VEHNAPPLSS WMSNGNLCGL VAPNDHEPEW ASGGGAHGAY AHVPAVIDFG VPGHTEVESI 240 ASLRGQYRAL FGKDTNSNNR QWILKRLEAF RNGDDFTPPS SRFSSPLSGE DTLMNVGASR 300 FKPQASPKRA AGKRQVKSAR SLYDDDAMDE HESPRRGVAA KGRGGKGAKG KRSAEATLPK 360 SAHKKAKSVS DAESNDGDIG KKGSGRAAGK PAGRGKPGEN GTGRRSKHHN PWALEEAEAL 420 VRGVAQCGGG KWADIKKLGF TAIEHRTAVD LKDKWRNLLR IAMLPQQSVK TVGDKKREIP 480 QELLAKVREL AAKQAKAKAA AESRR* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP000583 | 0.0 | CP000583.1 Ostreococcus lucimarinus CCE9901 chromosome 3, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_001416857.1 | 0.0 | predicted protein | ||||
TrEMBL | A4RTW7 | 0.0 | A4RTW7_OSTLU; Uncharacterized protein | ||||
STRING | ABO95150 | 0.0 | (Ostreococcus 'lucimarinus') |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP1276 | 9 | 16 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72650.2 | 2e-19 | TRF-like 6 |
Link Out ? help Back to Top | |
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Phytozome | 30413 |