PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 27049 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus
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Family | MYB_related | ||||||||
Protein Properties | Length: 189aa MW: 20739.7 Da PI: 4.6891 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 35.5 | 2.2e-11 | 7 | 57 | 3 | 48 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqkyl 48 +WT E++ l d+v+++G+g W+tI + R+ ++k++w++ + 27049 7 KWTRAEEDALRDGVRKHGPGKWRTIQKDPElgdilRARSNVDLKDKWRNMR 57 8**************************99999***99***********976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 14.258 | 1 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 5.83E-14 | 4 | 58 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.7E-5 | 4 | 59 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.2E-13 | 5 | 56 | IPR009057 | Homeodomain-like |
CDD | cd11660 | 6.39E-18 | 7 | 57 | No hit | No description |
Pfam | PF00249 | 3.9E-8 | 7 | 56 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006357 | Biological Process | regulation of transcription from RNA polymerase II promoter | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0046686 | Biological Process | response to cadmium ion | ||||
GO:0000785 | Cellular Component | chromatin | ||||
GO:0005730 | Cellular Component | nucleolus | ||||
GO:0003691 | Molecular Function | double-stranded telomeric DNA binding | ||||
GO:0033613 | Molecular Function | activating transcription factor binding | ||||
GO:0042803 | Molecular Function | protein homodimerization activity | ||||
GO:0070491 | Molecular Function | repressing transcription factor binding | ||||
GO:1990841 | Molecular Function | promoter-specific chromatin binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 189 aa Download sequence Send to blast |
MATAKYKWTR AEEDALRDGV RKHGPGKWRT IQKDPELGDI LRARSNVDLK DKWRNMRESG 60 ALDAADATGG AEEEREASDR EHAEGGGKRR RRDGDEAETS NAKGKENAMD AVTNALFNET 120 QRVKREASAA EAEASAAEAH AARCEREAWE AEKLARELID EAQRQKVGIP VEGTVDVADV 180 AADLLEEE* |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00652 | PBM | Transfer from LOC_Os01g51154 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP000593 | 0.0 | CP000593.1 Ostreococcus lucimarinus CCE9901 chromosome 13, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_001420911.1 | 1e-129 | predicted protein | ||||
TrEMBL | A4S6A7 | 1e-128 | A4S6A7_OSTLU; Uncharacterized protein | ||||
STRING | ABO99204 | 1e-129 | (Ostreococcus 'lucimarinus') |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP3956 | 9 | 12 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G49950.3 | 2e-22 | telomere repeat binding factor 1 |
Link Out ? help Back to Top | |
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Phytozome | 27049 |