PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 24137 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus
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Family | MYB_related | ||||||||
Protein Properties | Length: 1190aa MW: 129742 Da PI: 9.5938 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 21.9 | 4e-07 | 724 | 765 | 3 | 46 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 WT E ++v + q+G++ + +I++t+ +R+l +k ++ + 24137 724 EWTDMEKTKFVSGLLQYGKD-FVAISSTIR-TRSLDAVKQFYED 765 7*****************99.*********.*********9965 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF15784 | 2.1E-6 | 250 | 317 | IPR031557 | N-CoR, GPS2-interacting domain |
SuperFamily | SSF46689 | 5.76E-12 | 576 | 631 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51293 | 14.164 | 582 | 633 | IPR017884 | SANT domain |
SMART | SM00717 | 2.8E-7 | 583 | 631 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.43E-6 | 586 | 628 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 3.2E-5 | 586 | 627 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 9.36E-9 | 713 | 770 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51293 | 11.467 | 720 | 771 | IPR017884 | SANT domain |
SMART | SM00717 | 9.6E-4 | 721 | 769 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1190 aa Download sequence Send to blast |
MRTEPGRGAA PAPRRPSMFD YARGRDDDRA RAATATGGPP PGMTPAVPTM GRMNAAPRPG 60 FDAAPPPGMG AARPSLLASV RERPSLLSQQ RPPAVRVEAA RSGTGASSGM ESGEIGIGSA 120 RATPTPTPTS DATPKKRKIG GWGQALARAK TPTTAGGTDA PSSLRGEEVA DEGEVRGAPG 180 LGRGEESMGS FGDLRAKAGS PASATATPQF KDASTPTSDR GGWGAATARA QTTPATAEMK 240 ATPKAASVDP ETVKKAKAAE QRLKVTKEAL LGQMERVDGE VASLEKELQA LKNSSEEEKL 300 GAAAGSKDEI SRHKKETEAL RQRLSNAERS AQRAQDFAAQ KMREASVLAR DASMKRAQQR 360 GSDDVKRLNK DAAVFAASAI QKMLERQEAR RDRIERDMEH NKELAAKSIV RVKNEYGLPL 420 PEDIARVDFD AVVAHVVEGA KTPYMQEVAR KVTEVLQKRK DAVADKNYTN ALAYLKQREI 480 WRVKIIQEAN DRLAKEFVGG KKTFTPGSRA SGRNRSTNDL SGVARSEYEE MQMIKALQRT 540 EELRHMTTIP NMILDPEERR CAIFDSRNGL VEDPVAERDR INLIRPWTKA EKAIFHERFA 600 SYGKNFRRIA EHLEGRDTGD CVMYYYKFQK TDDGFRGRRR AAMKKRRAFA DAQRMRAIDP 660 ATIEAQREER AAPTAEARLE RAALAAAAKA AKAKARAEKA KIKAAKEAEE AKQNASKTPS 720 KGPEWTDMEK TKFVSGLLQY GKDFVAISST IRTRSLDAVK QFYEDNRELM DFDSLVGETS 780 VATVVTDIPS SAPTSSLLHG GDARANSKSF VNTVLDFNLR RALVASCVGL SALAGCAMHA 840 RASSSSTAAL GDAKGVDLLI GQTKFPRTVK LLPRDAPERA FETTKSNWNL YHVDGDKDVE 900 RGVMHDFADW PTDELREASI NLKVKDSAAY EAFDAIHSEF ERLNADRINA RADVGPAFSA 960 LLAWEKAKEE GLSSLIIATP DAYINSHCGP PLEFDSFILS FLLRGPKKWD VLFLDRGERG 1020 VNEDNLRHPE ALFSNKAWEK PYVLYKNTAT IVGEALPSNF YMVSKSFMDG ISAHLKATPL 1080 TNVDWWINRL CENGDLECFS YNAENWYDGL TSERKAKMGE PHARAPIVDT TPKVDATPAV 1140 VESAENVTAS VADASAESVK ESQLGVAQRP ESVVRSTRVV AASEAGKFI* |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP000582 | 0.0 | CP000582.1 Ostreococcus lucimarinus CCE9901 chromosome 2, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_001416502.1 | 0.0 | predicted protein | ||||
TrEMBL | A4RSE6 | 0.0 | A4RSE6_OSTLU; Uncharacterized protein | ||||
STRING | ABO94795 | 0.0 | (Ostreococcus 'lucimarinus') |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP2883 | 10 | 10 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G52250.1 | 4e-18 | MYB family protein |
Link Out ? help Back to Top | |
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Phytozome | 24137 |