PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 23972 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus
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Family | MYB_related | ||||||||
Protein Properties | Length: 630aa MW: 70453.8 Da PI: 4.7511 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 29.8 | 1.4e-09 | 537 | 587 | 2 | 44 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT........TTS-HHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmg........kgRtlkqcksrw 44 ++WT+eE+ l+++v+++G+g WktI + + Rt ++ +w 23972 537 KNWTPEEETALIEGVEKFGSGKWKTILADDArgknvfaaNARTNVDLAKKW 587 58************************7643334555555555555555555 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 7.143 | 531 | 591 | IPR017877 | Myb-like domain |
SMART | SM00717 | 3.2E-5 | 535 | 593 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 2.92E-12 | 536 | 614 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 5.3E-13 | 537 | 592 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 2.6E-7 | 537 | 564 | IPR001005 | SANT/Myb domain |
CDD | cd11660 | 1.18E-14 | 537 | 592 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 630 aa Download sequence Send to blast |
MATMATRDAR ATARPTRDAM LWTIEELASA GVDATTLRNL LPVGLAGEGA RAARARKRVR 60 HFFLLSASIA AIEGAEGEET EKSLEAHRDA MARARDACFQ EDDGDEEDLI GEDTEAFRAY 120 VKAAERAIEV LGMREACEGL DERRSARDET PRDAVRRVVE EWKDALLGVH GRDVDEHLDR 180 IEDAWTRKAA DRYHRLCEVE EWDEPSRALV KKALELLRAE LCGKATTLTT VQEHLANSYY 240 VPSRAKPGFT LGKRDDGVRE WVDVGARGVK RRAETNADAF VSSPSTKRVH SEETSPAKPR 300 SSPGRLGALL SKTISWVRKS VDAPAFIKSP FGKSPLGKSS RITASQTIDD VEERRTDEVE 360 TLEDDTPPSE HESEEEIMPT QVPTGSYTDE DDEDEDEDED KDKDPEPSPT QVHTGSYTDE 420 DDEDDDEDED EDPEPSPAPT EPSPAPTQTI QPAPLKRQGK VYPKAQRLVS VRAAHARSPL 480 TGSDDEYDEI EIEATPGNYL VPRVNRLQPV KTSVKQSPTR KRKYERQTTR RAPGRPKNWT 540 PEEETALIEG VEKFGSGKWK TILADDARGK NVFAANARTN VDLAKKWYHL RPSHLSNMWR 600 QHEQDQEIVA RQEKPKLDYI IDAILEGSH* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 266 | 271 | RGVKRR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP000581 | 0.0 | CP000581.1 Ostreococcus lucimarinus CCE9901 chromosome 1, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_001415671.1 | 0.0 | predicted protein | ||||
TrEMBL | A4RS33 | 0.0 | A4RS33_OSTLU; Uncharacterized protein | ||||
STRING | ABO93963 | 0.0 | (Ostreococcus 'lucimarinus') |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G49850.1 | 1e-09 | telomere repeat binding factor 3 |
Link Out ? help Back to Top | |
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Phytozome | 23972 |