PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 17449 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus
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Family | MYB_related | ||||||||
Protein Properties | Length: 718aa MW: 76269.4 Da PI: 4.9686 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 26.1 | 2.1e-08 | 61 | 111 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT....TTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg....kgRtlkqcksrwqky 47 rg W + E++ l++av+++G g W++ + Rt+ q+k++w+++ 17449 61 RGYWQAPEEQALKRAVRKHGIGAWEKMRNDPEfaalRSRTGVQLKDKWRNL 111 799***********************888888*****************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 8.4E-14 | 60 | 116 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 2.04E-12 | 60 | 114 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.5E-6 | 60 | 114 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS50090 | 8.177 | 61 | 112 | IPR017877 | Myb-like domain |
Pfam | PF00249 | 2.0E-5 | 61 | 111 | IPR001005 | SANT/Myb domain |
CDD | cd11660 | 2.63E-15 | 64 | 113 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 718 aa Download sequence Send to blast |
MAAKAQGARD AAPVPSGKAR GASASAKRAK EDARKRAGKR GAAATARDDG ATTAREASGV 60 RGYWQAPEEQ ALKRAVRKHG IGAWEKMRND PEFAALRSRT GVQLKDKWRN LIKFQHLRVD 120 EAAKVPYKAA VKAANAANAT GGKAGRGADK GGARGASAAN AKGGKAASAA SARKTNAAVN 180 AKKGKGASAS SAKKGAGGKK TMAVSRDALP KKGGGGTTNV AGAPTMSAKE KLKARFGHRH 240 DDDDQDEDDE YEEIAGVGRP STGAKAKFDA GVDAVVTQLK AKRAGMVNEV EHAESELARM 300 KTVVEEAEAV YSSARARVHE ALVGAHGEDE YYEDGEGEDT ADWDKYLHFG EHEDEDDDEE 360 VARAAEAAAE AHEAVKRGIK KPSEKKPSEK RPKAAVDEDA TDHDDDSDEE IDEDLVDSDE 420 DDDDLDEEER AVRIANEVLA EAGLPPMHEI EHVLLTELKK LEAANAAVVH ARLALEAVDA 480 EFAEALVSAH NNAAANAKAT TSAAFDHDDD LEKSFTMDGD EDEDDEDEDD EVDDEDDEEI 540 DEDLVDDEEI EEEIRPQPTS KSKAKPKAKS APSQNDGADA AGGRVVEDRR YGIYDARRYR 600 SEAENDAAEA AASKGGKVSA ASKRKAPTSS SAAAPKKSAK QTVKVEDTEI WYEQPNVAKA 660 GAAVMPKKSQ QFRAAPQSAP GSIPSWRRKR AATRVTIGRP VAGPTSWAAI GQHIIKE* |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP000591 | 0.0 | CP000591.1 Ostreococcus lucimarinus CCE9901 chromosome 11, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_001420545.1 | 0.0 | predicted protein | ||||
TrEMBL | A4S545 | 0.0 | A4S545_OSTLU; Uncharacterized protein | ||||
STRING | ABO98838 | 0.0 | (Ostreococcus 'lucimarinus') |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP4131 | 7 | 7 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G17520.1 | 9e-11 | MYB_related family protein |
Link Out ? help Back to Top | |
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Phytozome | 17449 |