PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 13931 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus
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Family | MYB_related | ||||||||
Protein Properties | Length: 234aa MW: 25528.8 Da PI: 9.8413 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 38 | 3.9e-12 | 88 | 127 | 3 | 44 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrw 44 +W++++ el+++a +q+G++ +++Iar ++ gRt+ q+k ++ 13931 88 KWSKDDTELFYRAMTQFGTD-FSLIARLFP-GRTRRQVKRKY 127 8*******************.*********.*********99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF15963 | 7.9E-28 | 79 | 163 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 9.0E-8 | 82 | 127 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51293 | 10.187 | 84 | 135 | IPR017884 | SANT domain |
SMART | SM00717 | 7.8E-9 | 85 | 133 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 2.09E-11 | 87 | 130 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 4.57E-9 | 88 | 127 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 234 aa Download sequence Send to blast |
MPDFGKKKTA SEPVGPLELP GRASMAPKLA VMAPQVQVID GNIVINPQSL TVNAAAEKDV 60 GMSDFKRVEE SGTRLNSATY SNRAKAEKWS KDDTELFYRA MTQFGTDFSL IARLFPGRTR 120 RQVKRKYLIE DRADPRRVEA AIKHRDQDPA MYKRLIEVLQ AQAAEADLAR SSIDARVVLD 180 ADTAEEATPP AVEDAQATDE SSPKTGGQRG ATKEAAALSA EQPTATRARR SRK* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5n9g_C | 4e-14 | 31 | 167 | 22 | 158 | Transcription factor TFIIIB component B'' homolog |
5n9g_H | 4e-14 | 31 | 167 | 22 | 158 | Transcription factor TFIIIB component B'' homolog |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 119 | 125 | RRQVKRK |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP000581 | 0.0 | CP000581.1 Ostreococcus lucimarinus CCE9901 chromosome 1, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_001415952.1 | 1e-168 | predicted protein | ||||
TrEMBL | A4RRS7 | 1e-167 | A4RRS7_OSTLU; Uncharacterized protein | ||||
STRING | ABO94244 | 1e-168 | (Ostreococcus 'lucimarinus') |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP3770 | 9 | 9 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G39160.1 | 7e-20 | MYB_related family protein |
Link Out ? help Back to Top | |
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Phytozome | 13931 |