PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN540216.1_FGP004
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB
Protein Properties Length: 300aa    MW: 35144 Da    PI: 11.0077
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN540216.1_FGP004genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding506.9e-162973348
                       SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                       +WT+eEd +l ++ k+ G ++W+++ar m+ +R++ +c++rw+ +l
  KN540216.1_FGP004 29 AWTPEEDARLQRLAKENGFRRWSRVARSMP-RRSARSCRDRWRHHL 73
                       7*****************************.***********9886 PP
2Myb_DNA-binding23.51.3e-07179222348
                        SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                        ++T+ +d+ l++++ +lG + Wk I r +  gRt    k+rw+ ++
  KN540216.1_FGP004 179 PFTARDDDELLRLHYRLGDR-WKEIGRAVY-GRTSRVMKHRWRELR 222
                        79****************99.********9.***********9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.0842277IPR017930Myb domain
SMARTSM007175.5E-132675IPR001005SANT/Myb domain
SuperFamilySSF466893.47E-2227117IPR009057Homeodomain-like
CDDcd001671.18E-122973No hitNo description
PfamPF002492.2E-142972IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.1E-192986IPR009057Homeodomain-like
PROSITE profilePS500905.22774118IPR017877Myb-like domain
SMARTSM007176.178125IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.6E-787112IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.6E-7160178IPR009057Homeodomain-like
SuperFamilySSF466893.59E-10163223IPR009057Homeodomain-like
PROSITE profilePS512949.494172226IPR017930Myb domain
SMARTSM007172.4E-4176224IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.5E-9179221IPR009057Homeodomain-like
PfamPF002491.1E-5179221IPR001005SANT/Myb domain
CDDcd001678.95E-4179221No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MDQEVIMATP PLPPPPRARC VVRLKLPPAW TPEEDARLQR LAKENGFRRW SRVARSMPRR  60
SARSCRDRWR HHLARDVYHR PFTARDDDEL LRLHYRLGDR WKEIGRAVYG RTSRVMKHAR  120
QQRQHRLPHL TESNAQQRQH RLPHLTEQHG MEDLPRSLAR NTLTQSWRHH LARDVYHRPF  180
TARDDDELLR LHYRLGDRWK EIGRAVYGRT SRVMKHRWRE LRRSGFPLAA AARKEQALAM  240
VDNMVESEVD ESDQSLPPPE LQRSLADALA SSFGYCSLAH EHAMDPLAGS LALGFACMAV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A1e-1530118795MYB PROTO-ONCOGENE PROTEIN
1h88_C6e-153011861149MYB PROTO-ONCOGENE PROTEIN
1h89_C6e-153011861149MYB PROTO-ONCOGENE PROTEIN
1mse_C1e-1530118795C-Myb DNA-Binding Domain
1msf_C1e-1530118795C-Myb DNA-Binding Domain
3zqc_A3e-15311586130MYB3
3zqc_D3e-15311586130MYB3
3zqc_G3e-15311586130MYB3
3zqc_J3e-15311586130MYB3
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN540216.1_FGP004
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0052000.0AP005200.4 Oryza sativa Japonica Group genomic DNA, chromosome 7, PAC clone:P0673E01.
GenBankAP0149630.0AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015645964.14e-82transcription factor MYB73
TrEMBLA0A0E0AJ082e-88A0A0E0AJ08_9ORYZ; Uncharacterized protein
TrEMBLA0A0E0I0502e-88A0A0E0I050_ORYNI; Uncharacterized protein
STRINGOGLUM07G11720.13e-89(Oryza glumipatula)
STRINGONIVA07G11150.13e-89(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP125692035
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G23290.18e-17myb domain protein 70