PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM08G08120.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WOX
Protein Properties Length: 285aa    MW: 30321.7 Da    PI: 6.8478
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM08G08120.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox48.61.4e-1542102257
                      T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
         Homeobox   2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                      r+R+++++eq+ +Le+ F++   +p ++e +++ + l     + +++V++WFqNrR + ++
  OGLUM08G08120.1  42 RSRWAPKPEQILILESIFNSgMVNPAKDETARIRRLLerfgAVRDANVFYWFQNRRSRSRR 102
                      89*****************99*************************************997 PP
2Wus_type_Homeobox104.76e-3441103264
  Wus_type_Homeobox   2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 
                        ar+RW+P+peQi iLe++++sG+++P+k+e+ ri++ Le++G+++d+NVfyWFQNr++R+r++
    OGLUM08G08120.1  41 ARSRWAPKPEQILILESIFNSGMVNPAKDETARIRRLLERFGAVRDANVFYWFQNRRSRSRRR 103
                        689**********************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.1E-919100IPR009057Homeodomain-like
PROSITE profilePS5007111.67738103IPR001356Homeobox domain
SuperFamilySSF466893.77E-1338109IPR009057Homeodomain-like
SMARTSM003899.9E-640107IPR001356Homeobox domain
PfamPF000462.4E-1342102IPR001356Homeobox domain
Gene3DG3DSA:1.20.5.6002.2E-4101139IPR012897Potassium channel, voltage dependent, Kv1.4, tandem inactivation domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0071805Biological Processpotassium ion transmembrane transport
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
GO:0005249Molecular Functionvoltage-gated potassium channel activity
GO:0030955Molecular Functionpotassium ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    Send to blast
MDRTATASWE VMSRRGEQQQ QLMMQAPASH NNGGGGGGEP ARSRWAPKPE QILILESIFN  60
SGMVNPAKDE TARIRRLLER FGAVRDANVF YWFQNRRSRS RRRARQLQQA CGAALHQLPS  120
AAAAAGAGGG GGYYHHHHQP SSSPFLMHGG GGVGVVTSTA AAPAVAASGH SLADEVDGGG  180
DDDLFAISRQ MGLMARHGGG DHHYSSYADS DATQLSYQPT GTIQVFINGV AYDVPSGEAL  240
DMAGTFGRDA MLVHSSGEVL PVDEHGVLIN SLQMGECYYL VSKSI
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor which may be involved in developmental processes. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1073050.0AK107305.1 Oryza sativa Japonica Group cDNA clone:002-126-D01, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015649642.11e-175WUSCHEL-related homeobox 10
SwissprotQ6Z3L41e-176WOX10_ORYSJ; WUSCHEL-related homeobox 10
TrEMBLA0A0E0ASR70.0A0A0E0ASR7_9ORYZ; Uncharacterized protein
STRINGOGLUM08G08120.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP107837109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17810.27e-31WUSCHEL related homeobox 12
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]