PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM05G22570.2

Organism

Oryza glumaepatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

NF-YC

Protein Properties

Length: 290aa MW: 32244.9 Da PI: 4.8932

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM05G22570.2	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	62.5	8.6e-20	6	86	18	98
NF-YC 18 nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 ++++P rikki++adedv +i+ +Pvl+ska elf+ +l r++ + + +tl s +++++ + +++dfl d+v + OGLUM05G22570.2 6 DTRFPAPRIKKIMQADEDVGKIALAVPVLVSKALELFLQDLCNRTYDITVQRGVKTLSSSHLKQCIHSYNVYDFLRDVVSK 86 5789**************************************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	5.5E-25	3	72	IPR009072	Histone-fold
SuperFamily	SSF47113	4.56E-20	4	88	IPR009072	Histone-fold
Pfam	PF00808	3.2E-18	8	71	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0005829	Cellular Component	cytosol
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 290 aa Download sequence Send to blast
MRKKLDTRFP APRIKKIMQA DEDVGKIALA VPVLVSKALE LFLQDLCNRT YDITVQRGVK 60 TLSSSHLKQC IHSYNVYDFL RDVVSKVPDM GTSDAGVDDK LGKRRKTAED DSEEESKRTR 120 NEAASQTSTG RGRGRGRGRG RRGGRVSERE IISTYEKFEE NHEFPPGQFS KPSQLKVDVS 180 VDGTDAIETK EATPLSNARA SLRNIDLNIE LTDYDDEGSA PLEVQPPAPA AGVVTTSSGP 240 LVSEVNEEAK TKDFLGWQLP ELTKMAMDPV QFALSSNHRL EEDEDYDNEE

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1jfi_A	6e-23	2	71	5	74	Transcription Regulator NC2 alpha chain
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	130	139	RGRGRGRGRG
2	130	140	RGRGRGRGRGR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB288048	0.0	AB288048.1 Oryza sativa Japonica Group OsDrAp2 mRNA for repressor protein, complete cds.
GenBank	AK068320	0.0	AK068320.1 Oryza sativa Japonica Group cDNA clone:J013150F08, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015639312.1	0.0	dr1-associated corepressor
TrEMBL	A0A0E0A135	0.0	A0A0E0A135_9ORYZ; Uncharacterized protein
STRING	OGLUM05G22570.2	0.0	(Oryza glumipatula)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12480.1	7e-55	nuclear factor Y, subunit C11