PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM01G24210.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NF-YC
Protein Properties Length: 509aa    MW: 56546.1 Da    PI: 6.1955
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM01G24210.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC86.33.3e-2787188199
            NF-YC   1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdf 91 
                      q+  fw ++   ie+++df +h++P+ar+kki+ +++   m++ + P++lsk celf+ el++r+w  a++ +r  +  +dia+a+++t+ +df
  OGLUM01G24210.1  87 QMDEFWRDRqkeIETTKDFSEHAIPMARLKKIVSSQKGNMMMTFDMPAFLSKMCELFVQELAVRAWASAQSHNRCIILDTDIAKAIASTESYDF 180
                      68899*765566********************************************************************************** PP

            NF-YC  92 lvdivprd 99 
                      lvdi  ++
  OGLUM01G24210.1 181 LVDILRNH 188
                      ***98665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471131.92E-1694188IPR009072Histone-fold
PfamPF008082.5E-9110172IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene3DG3DSA:1.10.20.107.6E-19111185IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 509 aa     Download sequence    Send to blast
MRVKIRPGTQ EFYKNFTCNS STIVGTRNMK ICGLQTRFHL HHRACIEPKA GSTYTHVYYS  60
EQQREGMEQT LDIPRSLRLP TPKAQQQMDE FWRDRQKEIE TTKDFSEHAI PMARLKKIVS  120
SQKGNMMMTF DMPAFLSKMC ELFVQELAVR AWASAQSHNR CIILDTDIAK AIASTESYDF  180
LVDILRNHRV KHKSSPCSTL TTKRCRLVDQ PSTSHMPYQH QLPQFAPTYT LAIPITPSLM  240
PPISHYIPFQ YPSLSQEVSP MMASAPIVNR SMLLIHNIAR GLGLQGNNIS TFANNNIPDN  300
IIGCSSPAVL ASMMSPALLE VAGTSLNPPN SHSICMMNMI NSSDPSGSSI GDINVANQAS  360
LAPSGHFNPA ILRESSCPSF LHSNNNDTIV AIPEGVDISG TMDVANDVAA IVINGQEEHE  420
RETNVEHHQQ NEIYESIDIG IINASVADGN KCSISWDELG MADDSLLDKF LEEFQVRNDS  480
VLRSGIELHE DPFLGNVMLE NPSTSNANK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5g49_B2e-1897185593NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU1203480.0GU120348.1 Oryza sativa Japonica Group clone KCS260F03 transcription binding factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015621622.10.0uncharacterized protein LOC4324193 isoform X1
TrEMBLA0A0D9YAX60.0A0A0D9YAX6_9ORYZ; Uncharacterized protein
STRINGOGLUM01G24210.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP91742145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63470.22e-24nuclear factor Y, subunit C4