PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM01G16410.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NF-YC
Protein Properties Length: 444aa    MW: 49096.4 Da    PI: 4.6721
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM01G16410.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC84.51.2e-2621122199
            NF-YC   1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdf 91 
                      q+  fw ++   ie ++df +h +P+ar+kki+ +++   m++ + P++lsk celf+ el++r+w  a++ +r  +  +dia+av++t+ +df
  OGLUM01G16410.1  21 QMDEFWRDRqkeIEMTKDFSEHMIPMARLKKIVSSQKGNMMMTFDMPAFLSKLCELFVQELAVRAWACAQSHNRCIILDTDIAEAVASTESYDF 114
                      68899*7655669********************************************************************************* PP

            NF-YC  92 lvdivprd 99 
                      lvdi  ++
  OGLUM01G16410.1 115 LVDILHNH 122
                      ***98765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF001258.4E-1027106IPR007125Histone H2A/H2B/H3
SuperFamilySSF471132.51E-1644120IPR009072Histone-fold
Gene3DG3DSA:1.10.20.102.4E-1945119IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 444 aa     Download sequence    Send to blast
MEQTLDVHRS LRPPMPMAQQ QMDEFWRDRQ KEIEMTKDFS EHMIPMARLK KIVSSQKGNM  60
MMTFDMPAFL SKLCELFVQE LAVRAWACAQ SHNRCIILDT DIAEAVASTE SYDFLVDILH  120
NHSVKQKSTP CSSTKRCRLV DQPSASHIPH QHLLPQFAPT YTLAIPITPS LMPLISQCTP  180
SSFPSLPQEK FPFMAPTPIV NRSMLFIDNI ARGLGLQGNN INAVANNNIL DNIVGCSSPA  240
VLASMMNPAL LGPSGAPLNP PNSQSYNCTM DIINSNDACG SSNSSVIVAN QANIAPSGHF  300
YPIALQSSCS TFLHSNNNDT ITAIPEGVDI SDIMHVTSDV DAATKVFSGQ EEQHEKETNV  360
EWHHQNEIYE SIDIEIINAT TRDGNKCSIS WDELGMADDS LLDNFLEELQ VRKDDVSDTR  420
IAFNKDPFLD DAVLSNPSTS NGNK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5g49_B2e-1731119593NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0032050.0AP003205.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:B1146B04.
GenBankAP0038520.0AP003852.2 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0440D10.
GenBankAP0149570.0AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015635714.10.0uncharacterized protein LOC4326495 isoform X1
TrEMBLA0A0D9Y8250.0A0A0D9Y825_9ORYZ; Uncharacterized protein
STRINGOGLUM01G16410.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP91742145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63470.21e-25nuclear factor Y, subunit C4