PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA08G0042800.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family HD-ZIP
Protein Properties Length: 761aa    MW: 82162.6 Da    PI: 5.4916
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA08G0042800.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox64.41.7e-2084140157
                        TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
           Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 
                        +++ +++t++q++e+e++F+++++p+ ++r+eL+++lgL+  qVk+WFqN+R+++k+
  ORGLA08G0042800.1  84 KKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKN 140
                        688999************************************************995 PP
2START209.51.3e-652764961206
                        HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EE CS
              START   1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....ka 79 
                        ela +a++elv++a+++ep+W++ss      ++++e+ + f+++ +      ++ea+r  +vv+m++ +lve+l+d++ q+ + +     +a
  ORGLA08G0042800.1 276 ELAVAAMDELVQMAQLDEPLWSSSSepaaALLDEEEYARMFPRGLGpkqygLKSEASRHGAVVIMTHSNLVEILMDVN-QFATVFSsivsRA 366
                        57899********************99999999********99888999*****************************.88888888888** PP

                        EEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEE CS
              START  80 etlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskv 164
                        +t+ev+s+g      galq+m++e+q++splvp R+++fvRy++  ++g+w++vdvS+ds ++ p    v +++++pSg+li++++ng+skv
  ORGLA08G0042800.1 367 STHEVLSTGvagnynGALQVMSMEFQVPSPLVPtRESYFVRYCKNNSDGTWAVVDVSLDSLRPSP----VLKCRRRPSGCLIQEMPNGYSKV 454
                        ***************************************************************98....7********************** PP

                        EEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
              START 165 twvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                        twvehv+++++++h+++++lv+sgla+gak+wv tl+rqce+
  ORGLA08G0042800.1 455 TWVEHVEVDDSSVHNIYKPLVNSGLAFGAKRWVGTLDRQCER 496
                        ****************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.1E-2266139IPR009057Homeodomain-like
SuperFamilySSF466895.01E-2071141IPR009057Homeodomain-like
PROSITE profilePS5007117.0781141IPR001356Homeobox domain
SMARTSM003892.3E-2082145IPR001356Homeobox domain
CDDcd000861.28E-1983142No hitNo description
PfamPF000466.1E-1884139IPR001356Homeobox domain
PROSITE patternPS000270116139IPR017970Homeobox, conserved site
PROSITE profilePS5084840.408267499IPR002913START domain
SuperFamilySSF559619.89E-35268498No hitNo description
CDDcd088753.04E-123271495No hitNo description
SMARTSM002341.9E-61276496IPR002913START domain
PfamPF018522.7E-54277496IPR002913START domain
Gene3DG3DSA:3.30.530.205.6E-6342495IPR023393START-like domain
SuperFamilySSF559613.46E-24518751No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009845Biological Processseed germination
GO:0009913Biological Processepidermal cell differentiation
GO:0048497Biological Processmaintenance of floral organ identity
GO:0048825Biological Processcotyledon development
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 761 aa     Download sequence    Send to blast
SLLKLQADML DSHHLQQALQ QQYFDQIPVT TTAAADSGDN MLHGRADAGG LVDEFESKSC  60
SENVDGAGDG LSGDDQDPNQ RPRKKRYHRH TQHQIQEMEA FFKECPHPDD KQRKELSREL  120
GLEPLQVKFW FQNKRTQMKN QHERHENAQL RAENDKLRAE NMRYKEALSS ASCPNCGGPA  180
ALGEMSFDEH HLRVENARLR DEIDRISGIA AKHVGKPPIV SFPVLSSPLA VAAARSPLDL  240
AGAYGVVTPG LDMFGGAGDL LRGVHPLDAD KPMIVELAVA AMDELVQMAQ LDEPLWSSSS  300
EPAAALLDEE EYARMFPRGL GPKQYGLKSE ASRHGAVVIM THSNLVEILM DVNQFATVFS  360
SIVSRASTHE VLSTGVAGNY NGALQVMSME FQVPSPLVPT RESYFVRYCK NNSDGTWAVV  420
DVSLDSLRPS PVLKCRRRPS GCLIQEMPNG YSKVTWVEHV EVDDSSVHNI YKPLVNSGLA  480
FGAKRWVGTL DRQCERLASA MASNIPNGDL GVITSVEGRK SMLKLAERMV ASFCGGVTAS  540
VAHQWTTLSG SGAEDVRVMT RKSVDDPGRP PGIVLNAATS FWLPVPPAAV FDFLRDETSR  600
SEWDILSNGG AVQEMAHIAN GRDHGNSVSL LRVNSANSNQ SNMLILQESC TDASGSYVVY  660
APVDIVAMNV VLNGGDPDYV ALLPSGFAIL PDGPSGNAQA AVGENGSGSG GGSLLTVAFQ  720
ILVDSVPTAK LSLGSVATVN SLIACTVERI KAAVCRDSNP Q
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in protoderm differentiation and radial pattern formation during early embryogenesis. {ECO:0000269|PubMed:11846882}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA08G0042800.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0779930.0AB077993.1 Oryza sativa mRNA for Roc1, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015650023.10.0homeobox-leucine zipper protein ROC1 isoform X2
SwissprotQ6ZAR00.0ROC1_ORYSJ; Homeobox-leucine zipper protein ROC1
TrEMBLI1QG770.0I1QG77_ORYGL; Uncharacterized protein
STRINGORGLA08G0042800.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP79938147
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G04890.10.0protodermal factor 2
Publications ? help Back to Top
  1. Lee JH, et al.
    Characterization of Arabidopsis and rice DWD proteins and their roles as substrate receptors for CUL4-RING E3 ubiquitin ligases.
    Plant Cell, 2008. 20(1): p. 152-67
    [PMID:18223036]
  2. Yi J, et al.
    OsMPK6 plays a critical role in cell differentiation during early embryogenesis in Oryza sativa.
    J. Exp. Bot., 2016. 67(8): p. 2425-37
    [PMID:26912801]
  3. Dou M,Cheng S,Zhao B,Xuan Y,Shao M
    The Indeterminate Domain Protein ROC1 Regulates Chilling Tolerance via Activation of DREB1B/CBF1 in Rice.
    Int J Mol Sci, 2016. 17(3): p. 233
    [PMID:26927068]
  4. Chou IT,Gasser CS
    Characterization of the cyclophilin gene family of Arabidopsis thaliana and phylogenetic analysis of known cyclophilin proteins.
    Plant Mol. Biol., 1997. 35(6): p. 873-92
    [PMID:9426607]