PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OB09G26010.1

Organism

Oryza brachyantha

Taxonomic ID

4533

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

Trihelix

Protein Properties

Length: 361aa MW: 39374.4 Da PI: 8.4461

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OB09G26010.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	37.4	6.5e-12	24	128	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm...............rergferspkqCkekwenlnkrykkikegekkrt....sessst 78 +W+++ + L+ea++ ++ +r+klk +W ++++ + ++p+qCk+k+e+++kry+++ e++ + + + OB09G26010.1 24 EWSESGIVRLLEAYEAKWLLRNRAKLKWSDWVDIAQEVsahcamennaaaagkPGSNSAKTPNQCKNKIESMKKRYRAESESAAAARagpaAAGGPS 120 5*****************************9999999999***99877777899*****************999876641222344567 PP trihelix 79 cpyfdqle 86 +++f++++ OB09G26010.1 121 WRFFSRMD 128 88888886 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	8.7E-14	22	128	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 361 aa Download sequence Send to blast
MDALHPDADA APLAAAAPPQ KRDEWSESGI VRLLEAYEAK WLLRNRAKLK WSDWVDIAQE 60 VSAHCAMENN AAAAGKPGSN SAKTPNQCKN KIESMKKRYR AESESAAAAR AGPAAAGGPS 120 WRFFSRMDGL LKGPAGSGQV LGELSNSVDL RAHPPAKPEV DVEADFVNQL ADAGPGALSD 180 LVNAYANGSI QEKSEKVENS GQIEGRAAES DVNVSSPRIK EANDDAEEVD KVWDMSKKRK 240 NTEFDIAKSI ELLASSFLKI ERARMDLYRE TERMRVEAEI KKGEMELKRT EIMAKTHLQI 300 AKLFAKRLKE CSGKTGGSSS VTAEVDNLAK KGENGMHGTK LQFAKVQGDW RRQLVVQKSG 360 L

Sequence ? help Back to Top

Protein Sequence Length: 361 aa Download sequence Send to blast

MDALHPDADA APLAAAAPPQ KRDEWSESGI VRLLEAYEAK WLLRNRAKLK WSDWVDIAQE  60
VSAHCAMENN AAAAGKPGSN SAKTPNQCKN KIESMKKRYR AESESAAAAR AGPAAAGGPS  120
WRFFSRMDGL LKGPAGSGQV LGELSNSVDL RAHPPAKPEV DVEADFVNQL ADAGPGALSD  180
LVNAYANGSI QEKSEKVENS GQIEGRAAES DVNVSSPRIK EANDDAEEVD KVWDMSKKRK  240
NTEFDIAKSI ELLASSFLKI ERARMDLYRE TERMRVEAEI KKGEMELKRT EIMAKTHLQI  300
AKLFAKRLKE CSGKTGGSSS VTAEVDNLAK KGENGMHGTK LQFAKVQGDW RRQLVVQKSG  360
L

Cis-element ? help Back to Top
Source	Link
PlantRegMap	OB09G26010.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC137592	0.0	AC137592.2 Oryza sativa (Japonica cultiva-group) chromosome 9 BAC clone OSJNBa0035B22, complete sequence.
GenBank	AK068834	0.0	AK068834.1 Oryza sativa Japonica Group cDNA clone:J013159M18, full insert sequence.
GenBank	AK103673	0.0	AK103673.1 Oryza sativa Japonica Group cDNA clone:J033136A07, full insert sequence.
GenBank	AP005090	0.0	AP005090.3 Oryza sativa Japonica Group genomic DNA, chromosome 9, BAC clone:OJ1065_E04.
GenBank	AP014965	0.0	AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006660969.1	0.0	PREDICTED: trihelix transcription factor ASIL1-like
TrEMBL	J3N022	0.0	J3N022_ORYBR; Uncharacterized protein
STRING	OB09G26010.1	0.0	(Oryza brachyantha)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP7333	33	46

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G54390.1	1e-45	sequence-specific DNA binding transcription factors