PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB06G24180.1
Common NameLOC107304354
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family M-type_MADS
Protein Properties Length: 140aa    MW: 15745.3 Da    PI: 11.0208
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB06G24180.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF65.55.6e-211962245
                  ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
        SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                  +ie+ks+r+v+fskRr+g++KKA+EL vLC+a vav+ +s  gk
  OB06G24180.1 19 FIEDKSRREVSFSKRRAGLFKKASELRVLCGASVAVLSVSMAGK 62
                  8**************************************99886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006622.0911062IPR002100Transcription factor, MADS-box
SuperFamilySSF554557.46E-201066IPR002100Transcription factor, MADS-box
SMARTSM004327.5E-201069IPR002100Transcription factor, MADS-box
PRINTSPR004047.7E-151232IPR002100Transcription factor, MADS-box
PfamPF003192.5E-191962IPR002100Transcription factor, MADS-box
PRINTSPR004047.7E-153247IPR002100Transcription factor, MADS-box
PRINTSPR004047.7E-154768IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 140 aa     Download sequence    Send to blast
MGRPRGGTSR GKQKIEIRFI EDKSRREVSF SKRRAGLFKK ASELRVLCGA SVAVLSVSMA  60
GKEARVRSMV DKVAKAKAKA KAGRQFWWEA DVVEALGEAE LPDFAKALER FRHSVCLSIN  120
KLQLSTTPRQ QLHISDYYSF
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB06G24180.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015693596.13e-98PREDICTED: MADS-box transcription factor 27-like
TrEMBLJ3MEH48e-97J3MEH4_ORYBR; Uncharacterized protein
STRINGOB06G24180.11e-97(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP28333088
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72350.15e-16M-type_MADS family protein