PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB02G10400.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family Trihelix
Protein Properties Length: 333aa    MW: 35580.9 Da    PI: 4.5766
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB02G10400.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix102.92.5e-32151235186
      trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                   rW+k+ev aLi++r+ +e+r+++  lk+plWeevs++m + g++rs+k+Ckekwen+nk+++k ke+ kkr + + +tcpyfd+l+
  OB02G10400.1 151 RWPKHEVEALIRVRTGLEDRFQEPGLKGPLWEEVSARMTAAGYRRSSKRCKEKWENINKYFRKAKESGKKR-PAHAKTCPYFDELD 235
                   8********************************************************************98.99999*******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500907.213144208IPR017877Myb-like domain
PfamPF138371.7E-23150237No hitNo description
CDDcd122034.18E-28150215No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MQSGYGGVSE FQQYMLDPGA FAISAPPQPA QPPAPGGQDL AAPFRRPLDI DYIHGASSSK  60
RAASKDKAAT PESPAPPPPA NYFKTKGDDN AAAASASAGA KISGETITLP PPAANPVPPV  120
DDMSQDGAGK ELVAYDVEAA ERGALHLSSS RWPKHEVEAL IRVRTGLEDR FQEPGLKGPL  180
WEEVSARMTA AGYRRSSKRC KEKWENINKY FRKAKESGKK RPAHAKTCPY FDELDRLYSR  240
SGGGGGNNAG AGEDAKASSE LLDAVVKYPD VRCAPPGFPF DGEQNEACEG GGKEAGKEEE  300
ARDDGDGEER AGGRATTDQD EEEEEDDQVE DDR
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00651PBMTransfer from LOC_Os02g01380Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB02G10400.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1200631e-146AK120063.1 Oryza sativa Japonica Group cDNA clone:J013001K22, full insert sequence.
GenBankAP0040491e-146AP004049.2 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1212_C06.
GenBankAP0067201e-146AP006720.1 Oryza sativa Japonica Group genomic DNA, chromosome 2, clone:OJA1212_C06.
GenBankAP0149581e-146AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
GenBankCP0126101e-146CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015688420.11e-146PREDICTED: uncharacterized protein LOC102721711
TrEMBLJ3L8S30.0J3L8S3_ORYBR; Uncharacterized protein
STRINGOB02G10400.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP63993547
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76890.23e-39Trihelix family protein