PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB01G28670.1
Common NameLOC102718793
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB
Protein Properties Length: 338aa    MW: 36844.8 Da    PI: 5.7672
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB01G28670.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.25.7e-161360148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg W++eEde+l++ + ++G g+W+++++  g+ R++k+c++rw +yl
     OB01G28670.1 13 RGLWSPEEDEKLYNHIIRYGVGCWSSVPKLAGLERCGKSCRLRWINYL 60
                     788*******************************************97 PP
2Myb_DNA-binding49.97.3e-1666109146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+++++E++l++ ++k lG++ W+ Ia+ ++ gRt++++k++w++
     OB01G28670.1  66 RGSFSQQEEDLIISLHKILGNR-WSQIASQLP-GRTDNEIKNFWNS 109
                      899*******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.3E-23663IPR009057Homeodomain-like
PROSITE profilePS5129418.367860IPR017930Myb domain
SuperFamilySSF466896.36E-2910107IPR009057Homeodomain-like
SMARTSM007176.8E-131262IPR001005SANT/Myb domain
PfamPF002492.7E-141360IPR001005SANT/Myb domain
CDDcd001671.17E-111660No hitNo description
PROSITE profilePS5129425.50161115IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.4E-2664115IPR009057Homeodomain-like
SMARTSM007171.3E-1565113IPR001005SANT/Myb domain
PfamPF002491.8E-1466110IPR001005SANT/Myb domain
CDDcd001673.37E-1168108No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MGREASTKPK LRRGLWSPEE DEKLYNHIIR YGVGCWSSVP KLAGLERCGK SCRLRWINYL  60
RPDLKRGSFS QQEEDLIISL HKILGNRWSQ IASQLPGRTD NEIKNFWNSC LKKKLRQRGI  120
DPATHKPLND DGDHGAGEGG EQQDDRQQQQ QHLPDEECFA VGGAGSDSLG APHSPAVSFD  180
PLSVTNVPTM MQQPSSPYAG AEHSFRSDTL CDYGGGVGVV SDAGTYSAYT GDSSSNSNST  240
AWTTCGSSVV VVGGGEPRMD MFGGRVDAEP PPYPFDTARF SPWHHHHEPT PAVPPPQRLD  300
DGGGAASFPI RSLSRGMPES CFDLGRGALD DEFGVDFL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-3091153108B-MYB
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1110116LKKKLRQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB01G28670.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0925931e-163FP092593.1 Phyllostachys edulis cDNA clone: bphylf046j05, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006645979.10.0PREDICTED: myb-related protein Hv33-like
TrEMBLJ3L0W10.0J3L0W1_ORYBR; Uncharacterized protein
STRINGOB01G28670.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP111643041
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26660.13e-73myb domain protein 86