PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OBART12G18270.1

Organism

Oryza barthii

Taxonomic ID

65489

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

CPP

Protein Properties

Length: 733aa MW: 78744 Da PI: 6.5497

Description

CPP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OBART12G18270.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCR	49.4	8.9e-16	460	499	2	41
TCR 2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 ++k+C+CkkskClk+YCeCf+ag++Cse C+C++C Nk + OBART12G18270.1 460 SCKRCSCKKSKCLKLYCECFHAGVFCSEPCSCQGCLNKPS 499 689**********************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01114	3.1E-15	459	500	IPR033467	Tesmin/TSO1-like CXC domain
PROSITE profile	PS51634	17.699	460	552	IPR005172	CRC domain
Pfam	PF03638	7.8E-12	462	497	IPR005172	CRC domain

Sequence ? help Back to Top
Protein Sequence Length: 733 aa Download sequence Send to blast
MDTPDRPPRA AAAAAAATAA VEDSPVFNFI NSLSPIPPPK PSDSAHNVQL FKSSDLAPVS 60 SIFASPHVNP VKESKLPIRE DSVQLSRESH SPNSVRTRTG ATSSIIRMIR CKNIVSENCS 120 ITCYLNDSTS SKASQPIQLC GGSAESDTNQ NTDGEKDPTT EQDRTDIEFV LLDQCGPEKM 180 DSSQSGNNAC ENQLSEQHKD ELGSFDGGYM FAHQPHSDML RLAPPFESET QLVNETLQTD 240 NVYCETLLTD GPSGSYTQNS APDPHLYWAG AVEGCATDYT PQMLPGACQS QLVPNDQINN 300 KLNEPSDYMP MDHNVSSQNL RGMRRRCLFN EKSGAANKGA KNSSARHSTN STTPRRKISS 360 SDNNLKTLRT PPCALPGIGL HLNALATVPK DKMVPHNDIQ SSLNQASNVP SAVGSSPPTD 420 DPHTINDDSS QTAVVAYVGE SSQGSPKKKR HKFDNGDGTS CKRCSCKKSK CLKLYCECFH 480 AGVFCSEPCS CQGCLNKPSN METVLSTREQ IESRNPLAFA PKVIRTEPGQ ELAGGVGCSM 540 SCRCEGCKNA FGRREGVALL GIEEAKRGCE EKDGGVKEET TDNDKQLVIY QDSINLTPAE 600 SVLATPSVVD YRPLVALPPL SSKKPRSSTK LGGYSSRLEG HLKSDILLSP FESYAEMMLG 660 DGTSNVLKGE SSPQTSVKVV SPNKKRVSPP RIGTGLSPIC KSGRKLILKS IPSFPSLGGD 720 ITNEDPNTSS LAP

Sequence ? help Back to Top

Protein Sequence Length: 733 aa Download sequence Send to blast

MDTPDRPPRA AAAAAAATAA VEDSPVFNFI NSLSPIPPPK PSDSAHNVQL FKSSDLAPVS  60
SIFASPHVNP VKESKLPIRE DSVQLSRESH SPNSVRTRTG ATSSIIRMIR CKNIVSENCS  120
ITCYLNDSTS SKASQPIQLC GGSAESDTNQ NTDGEKDPTT EQDRTDIEFV LLDQCGPEKM  180
DSSQSGNNAC ENQLSEQHKD ELGSFDGGYM FAHQPHSDML RLAPPFESET QLVNETLQTD  240
NVYCETLLTD GPSGSYTQNS APDPHLYWAG AVEGCATDYT PQMLPGACQS QLVPNDQINN  300
KLNEPSDYMP MDHNVSSQNL RGMRRRCLFN EKSGAANKGA KNSSARHSTN STTPRRKISS  360
SDNNLKTLRT PPCALPGIGL HLNALATVPK DKMVPHNDIQ SSLNQASNVP SAVGSSPPTD  420
DPHTINDDSS QTAVVAYVGE SSQGSPKKKR HKFDNGDGTS CKRCSCKKSK CLKLYCECFH  480
AGVFCSEPCS CQGCLNKPSN METVLSTREQ IESRNPLAFA PKVIRTEPGQ ELAGGVGCSM  540
SCRCEGCKNA FGRREGVALL GIEEAKRGCE EKDGGVKEET TDNDKQLVIY QDSINLTPAE  600
SVLATPSVVD YRPLVALPPL SSKKPRSSTK LGGYSSRLEG HLKSDILLSP FESYAEMMLG  660
DGTSNVLKGE SSPQTSVKVV SPNKKRVSPP RIGTGLSPIC KSGRKLILKS IPSFPSLGGD  720
ITNEDPNTSS LAP

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK073942	0.0	AK073942.1 Oryza sativa Japonica Group cDNA clone:J033075J10, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015620275.1	0.0	protein tesmin/TSO1-like CXC 2
TrEMBL	A0A0D3HWJ5	0.0	A0A0D3HWJ5_9ORYZ; Uncharacterized protein
STRING	OBART12G18270.1	0.0	(Oryza barthii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP12746	26	30

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G22780.1	3e-48	Tesmin/TSO1-like CXC domain-containing protein