PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART07G04820.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family CPP
Protein Properties Length: 789aa    MW: 85121.9 Da    PI: 6.4985
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART07G04820.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR50.25e-16466504240
              TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                       +k+C+CkkskClk+YCeCfaag++Cse C+C++C Nk 
  OBART07G04820.1 466 ACKRCSCKKSKCLKLYCECFAAGVYCSEPCSCQGCLNKP 504
                      589**********************************96 PP
2TCR50.93.1e-16552591140
              TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                      ++k+gCnCkks+ClkkYCeC++ g+ Cs++C+Ce+CkN+ 
  OBART07G04820.1 552 RHKRGCNCKKSSCLKKYCECYQGGVGCSSNCRCEGCKNTF 591
                      589***********************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011143.8E-17465506IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163437.401466592IPR005172CRC domain
PfamPF036388.9E-12468503IPR005172CRC domain
SMARTSM011141.7E-17552593IPR033467Tesmin/TSO1-like CXC domain
PfamPF036385.2E-12554590IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 789 aa     Download sequence    Send to blast
MDTPDRAAAA ARAEDSPLFS FIDSLSPIEP LKSTYSASSI QAYQSLNITS ISSIFTSPHD  60
NAQKESKLSK SSFAEFSESE VCADESDKNK PSKSSNAVRL FACTSTLTQA THKITSSVSE  120
GTVGPPEGSN DLPQPGQFDS GSPDHNTTPC HGVRSDLKQG KCRKLQAFQT AKTNTSEKRK  180
CLFSTEVQLM DGCQPEKLND EILGCDWDDL ISATSGELIA YDEDHKGVQL AVSNSESCGF  240
LLSKLTGDGD ISDRTHPSSS TQTYYRELLM DEDQTENAQL VPDGEKNIST EEIQDNLYEA  300
NGSIPTGYKV ETQQQRGMRR RCLVFEAAGY SNRIVQKESV MDLSVSTCKG KSPVQNHSNP  360
GKTPSPRVLR GIGLHLNALA LTSKDNMICQ DPMSSLVLSS ATQQEAHGKM LSAGENFIHP  420
GGELLELQMD DDCSAGVFLG NDHDSSQSNS PQKKRRKSDN GDDGEACKRC SCKKSKCLKL  480
YCECFAAGVY CSEPCSCQGC LNKPIHEEVV LSTRKQIEFR NPLAFAPKVI RMSDAGQDIT  540
GEDPNNTPAS ARHKRGCNCK KSSCLKKYCE CYQGGVGCSS NCRCEGCKNT FGKRDAAVST  600
EAEEMKQGGE EAENCGKEKE NDLQKANAQS EDHPFLELVP ITPPFVVSSS LLKPPNFSSA  660
KPPRPTKARS NSSRSSSKAP GAVHSQKFSK IANSGLNEEM PDILRDDASP GNCVKTSSPN  720
GKRVSPPHNA LSVSPSRKGG RKLILKSIPS FPSLIGDASS GSSMNSTESA FNTASPLALD  780
VRLYTSLLT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A9e-1746858912120Protein lin-54 homolog
5fd3_B9e-1746858912120Protein lin-54 homolog
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1452456KKRRK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00624PBMTransfer from PK22848.1Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0658970.0AK065897.1 Oryza sativa Japonica Group cDNA clone:J013048O08, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015646690.10.0protein tesmin/TSO1-like CXC 2
TrEMBLA0A0D3GMV80.0A0A0D3GMV8_9ORYZ; Uncharacterized protein
STRINGOBART07G04820.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP61473447
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G14770.11e-84TESMIN/TSO1-like CXC 2