PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART05G25790.4
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ARF
Protein Properties Length: 592aa    MW: 65720.9 Da    PI: 6.9488
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART05G25790.4genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B378.37.9e-2599200199
                      EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                      f+k+lt sd++++g +++p++ ae++      + +++ s++l+ +d++g +W++++iyr++++r++lt+GW+ Fv+ ++L +gD v+F   + +
  OBART05G25790.4  99 FCKTLTASDTSTHGGFSVPRRAAEDCfppldyS-QQRPSQELVAKDLHGTEWRFRHIYRGQPRRHLLTTGWSAFVNKKKLVSGDAVLFL--RGD 189
                      99****************************963.3445679************************************************..348 PP

                      EE..EEEEE-S CS
               B3  89 efelvvkvfrk 99 
                      ++el+++v+r+
  OBART05G25790.4 190 DGELRLGVRRA 200
                      9999***9996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.106.4E-4192202IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.22E-4393214IPR015300DNA-binding pseudobarrel domain
CDDcd100173.24E-2397199No hitNo description
PfamPF023629.8E-2399200IPR003340B3 DNA binding domain
PROSITE profilePS5086313.49399201IPR003340B3 DNA binding domain
SMARTSM010195.3E-2399201IPR003340B3 DNA binding domain
PfamPF065073.1E-31225305IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 592 aa     Download sequence    Send to blast
MTGIDLNTVE EDEEEAAEEV AANGSSPAPA RAGAVCLELW HACCRVVDVT LLADAATDEV  60
YAQLSLVPEK EEVARRADDG EGEDGDGMKQ RFARMPHMFC KTLTASDTST HGGFSVPRRA  120
AEDCFPPLDY SQQRPSQELV AKDLHGTEWR FRHIYRGQPR RHLLTTGWSA FVNKKKLVSG  180
DAVLFLRGDD GELRLGVRRA AQLKNGSAFP ALYNQCSNLG TLANVAHAVA TESVFNIYYN  240
PRLSQSEFIV PYWKFMKSLS QPFSVGLRFK MRYESEDATE RRYTGIITGS GDTDPMWHGS  300
KWKCLLVRWD DDAEFRRPNR VSPWEIELTS SVSGSHLSTP HSKRLKPCLP HVNPEYMVPR  360
GGVCPDFAES AQFHKVLQGQ ELFRPYRGTL VDASMGSNGF HQQDSPRAPG VVNKWQAQLH  420
GRAAFHGPPA PALPSQSSSP PSVLMFQQAN SKMPRLEFGH GQLDKHENDR RVRFGPSEGI  480
ERREQRIPLQ PYPTSGEVID GQVTVEKSHS PGRHGKDGPD NKAVGTNSCK IFGISLTEKV  540
PAREELDDGD ANYSLQSLKQ VPKSLGNSCA TVHEQRPVVG RVIDISTMDM MI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-100213353361Auxin response factor 1
4ldw_A1e-100213353361Auxin response factor 1
4ldw_B1e-100213353361Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0712900.0AB071290.1 Oryza sativa OsETTIN1 mRNA for Arabidopsis ETTIN-like protein 1, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003567902.10.0auxin response factor 15
RefseqXP_014754927.10.0auxin response factor 15
SwissprotQ8S9850.0ARFO_ORYSJ; Auxin response factor 15
TrEMBLA0A0D3GAT70.0A0A0D3GAT7_9ORYZ; Auxin response factor
STRINGBRADI2G16610.10.0(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33860.11e-144ARF family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]
  3. Khanday I,Yadav SR,Vijayraghavan U
    Rice LHS1/OsMADS1 controls floret meristem specification by coordinated regulation of transcription factors and hormone signaling pathways.
    Plant Physiol., 2013. 161(4): p. 1970-83
    [PMID:23449645]