PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART05G22220.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family CPP
Protein Properties Length: 385aa    MW: 42591.5 Da    PI: 8.148
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART05G22220.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR43.85e-1485122340
              TCR   3 kkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                      +k+C Ckks+Clk+YC Cfa g +Cse+C C+ C+Nk 
  OBART05G22220.1  85 CKHCACKKSRCLKLYCPCFAGGGYCSEKCGCQPCFNKA 122
                      89**********************************85 PP
2TCR49.96.2e-16181217339
              TCR   3 kkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 
                      ++gCnCkks+ClkkYC+C+++g+ Cs  C+CedC+N 
  OBART05G22220.1 181 RRGCNCKKSSCLKKYCDCYQDGTGCSLFCRCEDCRNP 217
                      589********************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011141.1E-1283124IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163430.01984219IPR005172CRC domain
PfamPF036385.7E-1086121IPR005172CRC domain
SMARTSM011141.7E-15179220IPR033467Tesmin/TSO1-like CXC domain
PfamPF036383.8E-11182216IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 385 aa     Download sequence    Send to blast
MEATPISVKP PSPVAAAPPP PPVQVPVPPP PPPPLPPAVA AVEPLPPQPV AVVVAEAEPC  60
SMNQLALTPT PKRQKVEESA DGNGCKHCAC KKSRCLKLYC PCFAGGGYCS EKCGCQPCFN  120
KALYAETVQT TRKVLLSRQK RMSLKINRRS EANAEAVVVF LTEKAGATED AHHSSSSTPP  180
RRGCNCKKSS CLKKYCDCYQ DGTGCSLFCR CEDCRNPFGK NEGIMAEESK RFLYTGADLD  240
HSEDEQDFIV ERSPRLQSPI SKESSFQQTP PHIRATNRDT HMFPQAISQW QPRSWHCSKR  300
QSNDRVIDDS GEYKNSNHDW QFAKPEDSYS ISRCVQILNG MAELSQVEKS VAPDVFLQAG  360
NREIFISLNG DVRALWLKRK IQNLT
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1080530.0AK108053.1 Oryza sativa Japonica Group cDNA clone:002-137-H05, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015640211.10.0protein tesmin/TSO1-like CXC 3 isoform X1
TrEMBLA0A0D3G9L60.0A0A0D3G9L6_9ORYZ; Uncharacterized protein
STRINGOBART05G22220.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP101592937
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22760.12e-42Tesmin/TSO1-like CXC domain-containing protein