PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OBART02G11990.2

Organism

Oryza barthii

Taxonomic ID

65489

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

CPP

Protein Properties

Length: 461aa MW: 51469.1 Da PI: 7.9252

Description

CPP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OBART02G11990.2	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCR	50.6	3.8e-16	121	160	1	40
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 k++kgC+C+ks+ClkkYCeCf+a+ Cs++C+C+dCkN e OBART02G11990.2 121 KHNKGCHCRKSECLKKYCECFQANILCSKNCRCQDCKNFE 160 589***********************************65 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51634	26.36	40	161	IPR005172	CRC domain
SMART	SM01114	7.6E-18	121	162	IPR033467	Tesmin/TSO1-like CXC domain
Pfam	PF03638	2.3E-12	124	159	IPR005172	CRC domain

Sequence ? help Back to Top
Protein Sequence Length: 461 aa Download sequence Send to blast
MPPVRSAPVA PPPPPPPPQQ KKPAVPVSRP WPMSFTPHPP PPPPPPLPSN YYQYVFSARV 60 YCDGCHCSPC GNKIENENIR KEAIETILLR NPLAFQPKIE NSPNTVTVRK DNSEAIPPIP 120 KHNKGCHCRK SECLKKYCEC FQANILCSKN CRCQDCKNFE GSEERKALVQ MKNASDRNHI 180 QEAANFALNG ATGSLGYKSS PVRRKKYQEN SLGEQILSEA QFQPTDHADV SQLASSCTGF 240 GGDIASNYQS KSSEMIYRSP LANTIPLIEV NDLVKNALVA CRKAPEAFLT KAGNKVEMQA 300 EKQYQTNDEI NNDKTKEQNL KEASLKDIQN KACIDRQNIN GTEPHLANSF KDSRPASPGT 360 QALMCDEMDT TFGNEDYRSP FVVPSRDQDI SELNADQERI VLTGLRDYLR VLITRGNINE 420 PNGRCHSNQI LVRDSNGIGF PEASWSNNCF FPRQIYVFQL S

Sequence ? help Back to Top

Protein Sequence Length: 461 aa Download sequence Send to blast

MPPVRSAPVA PPPPPPPPQQ KKPAVPVSRP WPMSFTPHPP PPPPPPLPSN YYQYVFSARV  60
YCDGCHCSPC GNKIENENIR KEAIETILLR NPLAFQPKIE NSPNTVTVRK DNSEAIPPIP  120
KHNKGCHCRK SECLKKYCEC FQANILCSKN CRCQDCKNFE GSEERKALVQ MKNASDRNHI  180
QEAANFALNG ATGSLGYKSS PVRRKKYQEN SLGEQILSEA QFQPTDHADV SQLASSCTGF  240
GGDIASNYQS KSSEMIYRSP LANTIPLIEV NDLVKNALVA CRKAPEAFLT KAGNKVEMQA  300
EKQYQTNDEI NNDKTKEQNL KEASLKDIQN KACIDRQNIN GTEPHLANSF KDSRPASPGT  360
QALMCDEMDT TFGNEDYRSP FVVPSRDQDI SELNADQERI VLTGLRDYLR VLITRGNINE  420
PNGRCHSNQI LVRDSNGIGF PEASWSNNCF FPRQIYVFQL S

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5fd3_A	2e-19	74	171	47	133	Protein lin-54 homolog
5fd3_B	2e-19	74	171	47	133	Protein lin-54 homolog
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP004771	0.0	AP004771.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, PAC clone:P0413A11.
GenBank	AP014958	0.0	AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015623618.1	0.0	protein tesmin/TSO1-like CXC 5
TrEMBL	A0A0D3F3I3	0.0	A0A0D3F3I3_9ORYZ; Uncharacterized protein
STRING	OBART02G11990.2	0.0	(Oryza barthii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP5755	26	53

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G29000.1	9e-68	Tesmin/TSO1-like CXC domain-containing protein