PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART01G31780.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family CPP
Protein Properties Length: 572aa    MW: 62174.6 Da    PI: 8.7149
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART01G31780.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR413.7e-13110148241
              TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 
                      +kk CnCk+skClk+YCeCfa+g++C+  C+C++C+N+ +
  OBART01G31780.1 110 KKKCCNCKHSKCLKLYCECFASGVYCDG-CNCSNCFNNVK 148
                      799*************************.********987 PP
2TCR512.9e-16194233140
              TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                      k++kgC+Ckks ClkkYCeCf+a+  Cse+CkC dCkN e
  OBART01G31780.1 194 KHNKGCHCKKSGCLKKYCECFQANILCSENCKCMDCKNFE 233
                      589***********************************65 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011143.8E-14109149IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163437.003110234IPR005172CRC domain
PfamPF036381.5E-9111146IPR005172CRC domain
SMARTSM011148.4E-20194235IPR033467Tesmin/TSO1-like CXC domain
PfamPF036381.1E-12197232IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 572 aa     Download sequence    Send to blast
MAAAAAAVSR ALQPRAVPVG FPQPQQLRAH LPVGVPQQLH PRGLPVMRSH HVVHVPLPRP  60
AVAVAVPVPQ VRPAQPQPVP RPPVAVPLKP ESPKPPRARL YEGKDGTPTK KKCCNCKHSK  120
CLKLYCECFA SGVYCDGCNC SNCFNNVKNE TARREAIDAT LERNPDAFRP KIGSSPHANR  180
NNMEAAGDLP LVGKHNKGCH CKKSGCLKKY CECFQANILC SENCKCMDCK NFEGSEERKA  240
LFQGDHKNSI HMQQAANAAV NGAIGAAAFS SPSTSRKRKH IDPSLDHSAK ENGAHRTNHV  300
PQKNGMPSDG PLPINQPVHP PTLGPFKVTY RPLLADIVQP GDVKELCKLL VVVSGNAAKA  360
YAGKKSQEDK VVEKEDEMGG KREGEIGGSL ASTNHDREEN NKDPNNQKAS ADDPSTGGTR  420
AGKASLEESK HDCNDDQKSN RPMSPGTLAL MCDEQDTMFM TSQNVVPQQP APVNQNQSEL  480
FAEQERCVLT EFRDCLHKLV TFGRMKEENF SMAIKSEVPA HPMQANGVSR IPYSKEVDVP  540
VVKTFLQSSS RHPAAGNSAT GHLDKKPKHE NT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A2e-2911424314132Protein lin-54 homolog
5fd3_B2e-2911424314132Protein lin-54 homolog
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPlays a role in development of both male and female reproductive tissues. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00045PBMTransfer from AT4G29000Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1221120.0AK122112.1 Oryza sativa Japonica Group cDNA clone:J033127O09, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015621699.10.0protein tesmin/TSO1-like CXC 5 isoform X1
SwissprotQ9SZD11e-147TCX5_ARATH; Protein tesmin/TSO1-like CXC 5
TrEMBLA0A0D3EUA40.0A0A0D3EUA4_9ORYZ; Uncharacterized protein
STRINGOBART01G31780.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP47303657
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29000.11e-121Tesmin/TSO1-like CXC domain-containing protein