PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009629660.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MIKC_MADS
Protein Properties Length: 342aa    MW: 39145 Da    PI: 5.4498
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009629660.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF89.12.3e-28958150
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                    k+ien++nrqvtfskRrng++KKA+ELSvLCd++va+i+fs++g++ ++s
  XP_009629660.1  9 KKIENTTNRQVTFSKRRNGLIKKAYELSVLCDVDVALIMFSPSGRISTFS 58
                    68***********************************************8 PP
2K-box19.54e-08102172171
           K-box   1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKne 71 
                     yq++s+ +  +++ e+ qqe+ k k ++e + r +R + G+  e  ++ e q  e+ L++ lk++ ++K+ 
  XP_009629660.1 102 YQAASSPASVDSQIEEFQQEILKYKTQLEDMDRRLRMYEGDLCEITTVCEAQYREEILQETLKQVQARKHV 172
                     6667777788999*******************************************************974 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006629.885161IPR002100Transcription factor, MADS-box
SMARTSM004321.1E-37160IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.35E-30282IPR002100Transcription factor, MADS-box
CDDcd002651.66E-38275No hitNo description
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-25323IPR002100Transcription factor, MADS-box
PfamPF003191.3E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-252338IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-253859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010152Biological Processpollen maturation
GO:0080092Biological Processregulation of pollen tube growth
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    Send to blast
MGRVKLQIKK IENTTNRQVT FSKRRNGLIK KAYELSVLCD VDVALIMFSP SGRISTFSGN  60
KSIEDIMARY VNLPEHDRGR LHNQEHLQRA IAKLKCETDR TYQAASSPAS VDSQIEEFQQ  120
EILKYKTQLE DMDRRLRMYE GDLCEITTVC EAQYREEILQ ETLKQVQARK HVLEETYSSP  180
QRQTAPQPQM DFASQNVNVV NNVATSDSIP NTSSNTFMDW VPRSQRDPHV QILNFLDSNG  240
LLPFRDEADQ RMENMLPPSL TQLHTPNVSA VVTDHLSPPN NRFENDPPRP TSSFEGIIDV  300
NNAPWPPLYP TGNDPFPEAQ PRERALLELF LSQLTPVNQD HL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P1e-15189190Myocyte-specific enhancer factor 2B
1tqe_Q1e-15189190Myocyte-specific enhancer factor 2B
1tqe_R1e-15189190Myocyte-specific enhancer factor 2B
1tqe_S1e-15189190Myocyte-specific enhancer factor 2B
3mu6_A8e-16270168Myocyte-specific enhancer factor 2A
3mu6_B8e-16270168Myocyte-specific enhancer factor 2A
3mu6_C8e-16270168Myocyte-specific enhancer factor 2A
3mu6_D8e-16270168Myocyte-specific enhancer factor 2A
6bz1_A1e-15180179MEF2 CHIMERA
6bz1_B1e-15180179MEF2 CHIMERA
6bz1_C1e-15180179MEF2 CHIMERA
6bz1_D1e-15180179MEF2 CHIMERA
6c9l_A1e-15189190Myocyte-specific enhancer factor 2B
6c9l_B1e-15189190Myocyte-specific enhancer factor 2B
6c9l_C1e-15189190Myocyte-specific enhancer factor 2B
6c9l_D1e-15189190Myocyte-specific enhancer factor 2B
6c9l_E1e-15189190Myocyte-specific enhancer factor 2B
6c9l_F1e-15189190Myocyte-specific enhancer factor 2B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that forms heterodimers with the MADS-box proteins AGL30 and AGL65 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269|PubMed:19211705}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754433e-74HG975443.1 Solanum pennellii chromosome ch04, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009629660.10.0PREDICTED: agamous-like MADS-box protein AGL66 isoform X1
RefseqXP_016465678.10.0PREDICTED: agamous-like MADS-box protein AGL66 isoform X1
SwissprotQ9LM465e-51AG104_ARATH; Agamous-like MADS-box protein AGL104
TrEMBLA0A1S3ZN400.0A0A1S3ZN40_TOBAC; agamous-like MADS-box protein AGL66 isoform X1
STRINGXP_009629660.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA61831925
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22130.12e-53AGAMOUS-like 104
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]