PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009613170.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C3H
Protein Properties Length: 517aa    MW: 58201.1 Da    PI: 5.0641
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009613170.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH39.21.2e-12177198526
                     --SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                      C++f++tG Ck+G++CkF+H+
  XP_009613170.1 177 VCPYFMKTGVCKFGSNCKFNHP 198
                     7********************8 PP
2zf-CCCH31.33.6e-10230254327
                     S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                     + +C++++ +G CkyG  CkF+H++
  XP_009613170.1 230 QIECKYYLTSGGCKYGKACKFNHSR 254
                     568********************95 PP
3zf-CCCH40.83.6e-13275299226
                     -S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                     ++++C++++rtG CkyG++C+F+H+
  XP_009613170.1 275 GEKECPYYMRTGSCKYGSNCRFHHP 299
                     7899********************9 PP
4zf-CCCH18.24.5e-06415437527
                     --SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   5 lCrffartGtCkyGdrCkFaHgp 27 
                      C++f +tG Cky  +CkF+H++
  XP_009613170.1 415 DCSYFIKTGDCKYKFNCKFHHPK 437
                     7********************96 PP
5zf-CCCH36.11.1e-11459483327
                     S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                     +  C+f++r+G+Ck+G+ CkF H++
  XP_009613170.1 459 QTVCSFYSRYGICKFGPACKFDHPE 483
                     678********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003561.6E-6172199IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.995172200IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.11E-6172199IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.2E-6176197IPR000571Zinc finger, CCCH-type
PfamPF006422.3E-10177198IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.474227255IPR000571Zinc finger, CCCH-type
SMARTSM003562.3E-4227254IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-7231254IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.02E-5232256IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.2E-5233255IPR000571Zinc finger, CCCH-type
SMARTSM003564.3E-7273300IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.624273301IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.72E-7275300IPR000571Zinc finger, CCCH-type
PfamPF006429.8E-11275299IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.3E-5279298IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.723410438IPR000571Zinc finger, CCCH-type
SMARTSM003560.53410437IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.63E-5415438IPR000571Zinc finger, CCCH-type
PfamPF146082.5415436No hitNo description
SMARTSM003563.4E-6456483IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.131456484IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.43E-5457484IPR000571Zinc finger, CCCH-type
PfamPF006424.4E-9459483IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.9E-4461483IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 517 aa     Download sequence    Send to blast
MEEAIEQQQF QNQNQSPKHT QEELGFESQT PQASLLPSDL NIENPNENQP NENDDEDEMA  60
MQIICEELRD LVLNQALDKE REKEDLHHLD PEENGKINEN EVENVEGNDE GWGDVGEYGD  120
YHYDDENRSG SVNGNDNEND GEKENGYEGD SKEGGGFNAN NRIKRKCSYP LRPDAQVCPY  180
FMKTGVCKFG SNCKFNHPSR RKYQPLLSIL QQGTKEKGKQ REESQERPGQ IECKYYLTSG  240
GCKYGKACKF NHSREKGSIS PIAEFNFLGL PIRPGEKECP YYMRTGSCKY GSNCRFHHPD  300
PTTVAGADRS SGYNNGGAVP VQASSHPAAS SWSSPRALND TAPYVPMMYP PTQGIPSPNT  360
EWNGYQAPVY PTAEKRLPTP PAFAMNNPAT KTNYYPRPLQ PLLVEEYPER PGQLDCSYFI  420
KTGDCKYKFN CKFHHPKSRV PKANSSILNE KGLPLRPDQT VCSFYSRYGI CKFGPACKFD  480
HPENYVGSAS STECGFDQPQ QSQISLGWQG RELDVDH
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754421e-102HG975442.1 Solanum pennellii chromosome ch03, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009613170.10.0PREDICTED: zinc finger CCCH domain-containing protein 67 isoform X1
SwissprotQ9STM41e-118C3H43_ARATH; Zinc finger CCCH domain-containing protein 43
TrEMBLA0A1S4D5X50.0A0A1S4D5X5_TOBAC; zinc finger CCCH domain-containing protein 67-like isoform X1
STRINGXP_009613170.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA44682343
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63260.21e-112C3H family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]