PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009605047.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | Nin-like | ||||||||
Protein Properties | Length: 1014aa MW: 111714 Da PI: 5.5501 | ||||||||
Description | Nin-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | RWP-RK | 92.4 | 3.3e-29 | 614 | 665 | 1 | 52 |
RWP-RK 1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 aek+isle+l++yF++++kdAAk+Lgvc+T++KriCRq+GI+RWP+Rki+++ XP_009605047.1 614 AEKTISLEVLQQYFAGSLKDAAKSLGVCPTTMKRICRQHGISRWPSRKINKV 665 589***********************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51519 | 17.621 | 599 | 685 | IPR003035 | RWP-RK domain |
Pfam | PF02042 | 3.4E-26 | 617 | 665 | IPR003035 | RWP-RK domain |
PROSITE profile | PS51745 | 23.809 | 919 | 1001 | IPR000270 | PB1 domain |
Gene3D | G3DSA:3.10.20.240 | 1.2E-25 | 919 | 1000 | No hit | No description |
SuperFamily | SSF54277 | 4.25E-22 | 919 | 1005 | No hit | No description |
SMART | SM00666 | 8.2E-23 | 919 | 1001 | IPR000270 | PB1 domain |
CDD | cd06407 | 7.73E-38 | 920 | 1000 | No hit | No description |
Pfam | PF00564 | 2.2E-16 | 920 | 1000 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0010118 | Biological Process | stomatal movement | ||||
GO:0010167 | Biological Process | response to nitrate | ||||
GO:0042128 | Biological Process | nitrate assimilation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1014 aa Download sequence Send to blast |
MSEPEEEMNH MFRSKPKDFL PRPPPTQHTV AAENQNQREP SLMMDLDLDL DASWSFDQIF 60 AAAAASNNPM SPFLVSTTAS EQPCSPLWAF SDENEDNKPS TGNAISAASL RLSSYPRFLT 120 YTGDHEAAAE TLSVADDKKR IPLPIMGLTP LDYLDGSCII KERMTQALRY LKESTGERVL 180 AQVWAPVKNG GRYMLTTSGQ PFVLDPDCNG LHQYRMVSLM YMFAVDGETD GVLGLPGRVY 240 RKKLPEWTPN VQYYSSKEFP RLNHALHYNV RGTLALPVFE PSGQSCVGVL EIIMTSQKIN 300 YAPEVDRVCK ALEAVNLKSS EILDHQNTQI CNEGRQNALV EILEILTAVC ETYKLPLAQT 360 WVPCRHRSVL ADGGGLKKSC SSFDGSCMGQ VCMSTTDVSF YVVDAHMWGF REACAEHHLQ 420 KGQGVAGRAY ASQKSCFCED IRLFCKTEYP LVHYARLFGL SSCFAICLRS TYTGNDDYIL 480 EFFLPPNDGD YNDQLALLNS LLLTMKQHFR SLRVASGEEL EHDWGSVEVI KASMEDKLGS 540 RLESVPTTKS PPQPASVVNG RVPPDLMEEQ QAPVELNVAK VAEGVNGTAE AHNHASFSEN 600 KGTGKKSERK RGKAEKTISL EVLQQYFAGS LKDAAKSLGV CPTTMKRICR QHGISRWPSR 660 KINKVNRSLS KLKRVIESVQ GADGTFSLTS LAPNSLPVAV GSISWPAGMN GSPCNASEYH 720 EEKNELSNHG IPGSHEEAEP SNQMMESRII GNEELSPKQN GFVREGSHRS RTGSGSREES 780 AGTPTSHGSC QGSPFHANES SPQNELVNSP TQELSVKVGG SSEPARQTTG EINLSTAFLM 840 PGPYIPEHTQ QLFGGMLVED AGSSHDLRNL CPAGDAMFDD RVPEYSWTNP PCSNGIAKDQ 900 VSLPAEKMPQ FSTRPEVMSI TIKATYREDI IRFRLLLSSG IFMLKEEVAK RLKLEVGTFD 960 IKYLDDDHEW VLIACDADLQ ECVDISRSSG SNVVRLLVHD IMPNLGSSCE SSGE |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in regulation of nitrate assimilation and in transduction of the nitrate signal. {ECO:0000269|PubMed:18826430}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00449 | DAP | Transfer from AT4G24020 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Not regulated by the N source or by nitrate. {ECO:0000269|PubMed:18826430}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975447 | 0.0 | HG975447.1 Solanum pennellii chromosome ch08, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009605047.1 | 0.0 | PREDICTED: protein NLP7 | ||||
Swissprot | Q84TH9 | 0.0 | NLP7_ARATH; Protein NLP7 | ||||
TrEMBL | A0A1S3ZVF3 | 0.0 | A0A1S3ZVF3_TOBAC; protein NLP6-like | ||||
STRING | XP_009605047.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA5223 | 22 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G24020.1 | 0.0 | NIN like protein 7 |