PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009600648.1

Organism

Nicotiana tomentosiformis

Taxonomic ID

4098

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

C3H

Protein Properties

Length: 478aa MW: 53137.3 Da PI: 5.4814

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009600648.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	39.5	9.2e-13	150	172	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 + C ++++tGtCkyG +CkF+H+ XP_009600648.1 150 ADCAYYMKTGTCKYGLNCKFNHP 172 68********************8 PP
2	zf-CCCH	27.1	7.3e-09	200	222	5	27
--SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHgp 27 +C++++ G CkyG+ Ck+ H++ XP_009600648.1 200 ECKYYLTEGGCKYGNACKYYHSR 222 7********************95 PP
3	zf-CCCH	40.8	3.6e-13	243	267	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 +++ C++++rtG CkyG++C+F+H+ XP_009600648.1 243 GEKDCPYYMRTGSCKYGSNCRFHHP 267 7889********************9 PP
4	zf-CCCH	37.3	4.5e-12	418	443	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 +++ C+f++r+G+Ck+G+ CkF H++ XP_009600648.1 418 DQAVCSFYSRYGICKFGPACKFDHPE 443 6789********************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00356	1.6E-5	146	173	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	2.75E-6	146	175	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	14.192	146	174	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	2.5E-10	150	172	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	3.0E-5	152	172	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	0.0035	195	222	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	13.882	195	223	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	1.7E-5	200	223	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	2.8E-6	200	222	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	6.9E-5	201	222	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	16.718	241	269	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	2.2E-7	241	268	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	8.63E-7	243	269	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	1.0E-10	243	267	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	6.3E-6	247	266	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	6.803	376	393	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	10	376	397	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	1.7E-5	414	441	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	2.7E-6	416	443	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	15.14	416	444	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	2.0E-9	418	443	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 478 aa Download sequence Send to blast
MEAIESQQHI QNLNDSTLEK QGLGLDPQPS FSPDPNVQNP PQNLPDAVES DDDDEIALQF 60 ICEELQGLVL NQAYIEERSQ GENHEENGRE KSENECGDNY YGGGDYTWSE NGNENENDVE 120 NENSDVAGSK QWGFNGNRRG LNHPLRPDAA DCAYYMKTGT CKYGLNCKFN HPSQRRNQQQ 180 WAMEKGKQKD DSEERAGQIE CKYYLTEGGC KYGNACKYYH SRRKGAISPV LNINFLGLPI 240 RPGEKDCPYY MRTGSCKYGS NCRFHHPDPS TVAGGDPSSG YNGGSAPVKS APYPTGSSWS 300 SPRALNGTAS FVPVVYPASQ GIPLSPQWNG YLAPVYPTSG KSLPTPPAFT MKDPAIKTNF 360 YTRAQQPWLV EEYPERPSQP DCSYFIKTGD CKFHHPKNQT SKTNMSVLND KGLPLRPDQA 420 VCSFYSRYGI CKFGPACKFD HPEHYDNSAS SIGSVFDQRN SATSYGSSWR GKETEVAL

Sequence ? help Back to Top

Protein Sequence Length: 478 aa Download sequence Send to blast

MEAIESQQHI QNLNDSTLEK QGLGLDPQPS FSPDPNVQNP PQNLPDAVES DDDDEIALQF  60
ICEELQGLVL NQAYIEERSQ GENHEENGRE KSENECGDNY YGGGDYTWSE NGNENENDVE  120
NENSDVAGSK QWGFNGNRRG LNHPLRPDAA DCAYYMKTGT CKYGLNCKFN HPSQRRNQQQ  180
WAMEKGKQKD DSEERAGQIE CKYYLTEGGC KYGNACKYYH SRRKGAISPV LNINFLGLPI  240
RPGEKDCPYY MRTGSCKYGS NCRFHHPDPS TVAGGDPSSG YNGGSAPVKS APYPTGSSWS  300
SPRALNGTAS FVPVVYPASQ GIPLSPQWNG YLAPVYPTSG KSLPTPPAFT MKDPAIKTNF  360
YTRAQQPWLV EEYPERPSQP DCSYFIKTGD CKFHHPKNQT SKTNMSVLND KGLPLRPDQA  420
VCSFYSRYGI CKFGPACKFD HPEHYDNSAS SIGSVFDQRN SATSYGSSWR GKETEVAL

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009600648.1	0.0	PREDICTED: zinc finger CCCH domain-containing protein 67-like isoform X1
Swissprot	Q9STM4	1e-102	C3H43_ARATH; Zinc finger CCCH domain-containing protein 43
TrEMBL	A0A1S4B1D1	0.0	A0A1S4B1D1_TOBAC; zinc finger CCCH domain-containing protein 67-like isoform X1
STRING	XP_009600648.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4468	23	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G48440.1	1e-104	C3H family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]