PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009592157.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ERF
Protein Properties Length: 423aa    MW: 48284.4 Da    PI: 4.8996
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009592157.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.44.2e-19206256256
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                      y+GVr+++ +g+WvAeIr p++   r+r +lg+f+tae+Aa a+++ + kl+ge
  XP_009592157.1 206 LYRGVRQRH-WGKWVAEIRLPRN---RTRLWLGTFDTAEDAAMAYDREAFKLRGE 256
                     59******9.**********955...5**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000186.19E-34205265No hitNo description
Gene3DG3DSA:3.30.730.103.3E-32206264IPR001471AP2/ERF domain
SMARTSM003801.4E-39206269IPR001471AP2/ERF domain
SuperFamilySSF541711.11E-22206264IPR016177DNA-binding domain
PROSITE profilePS5103223.024206263IPR001471AP2/ERF domain
PRINTSPR003677.2E-11207218IPR001471AP2/ERF domain
PfamPF008472.4E-12207256IPR001471AP2/ERF domain
PRINTSPR003677.2E-11229245IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 423 aa     Download sequence    Send to blast
MATSEDYGKS TTAITEEMDC DKGRDFDDNT FERQQRRPVF EEASISQRRF KKIKSPERQH  60
YSQSSSSSSS YSQQPLSQSS VPYNNPISMS FPPLPSSSKH VFPFSFDGTQ QSIENLYQMR  120
PNTTPLFRPQ NQNQQQMISF SPQQCPYPPY FAGELGQPQN QQQLLQYWNE TLNLSPRGRM  180
MMMSRLGQDN KGLFRPQLQP INTTKLYRGV RQRHWGKWVA EIRLPRNRTR LWLGTFDTAE  240
DAAMAYDREA FKLRGENAKL NFPELFLGKD REGPSIETIE STHTKQPDQE SESLPLEPLN  300
IELLPPPPPP QPPPEVDNQD EDSGMGSSEV TACDEVQVQG VSLQSTELVW GENEMAEAWF  360
NAIPAGWGPG SPVWDDLDAN NNFIFPPNFH FGNVHSHNSD PHNQHIHDNT DPSSPSCPMR  420
PFF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-21205263160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00458DAPTransfer from AT4G28140Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754461e-125HG975446.1 Solanum pennellii chromosome ch07, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009592157.10.0PREDICTED: ethylene-responsive transcription factor ERF054-like
TrEMBLA0A1S4C0M40.0A0A1S4C0M4_TOBAC; ethylene-responsive transcription factor ERF054-like
STRINGXP_009592157.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA47182136
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20880.14e-60ERF family protein